Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 2 AapM from Variovorax sp. SCN45

 Score =  107 bits (266), Expect = 5e-28
 Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 38/235 (16%)

Query: 68  GLGATLRLSLWGMVLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVFIFYFF 127
           GL  TL LS++G+  A   G  + + R  +   ++     +++ +R +P      I   F
Sbjct: 157 GLPLTLMLSVFGIAFAFPFGVCLALGRRSRMPAIKAICVGYIEFIRGVP-----LISLLF 211

Query: 128 ISNQLIPLL-----GLDELLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIA 182
           +S+ ++PL       +D+LLR   A +                         + ++AYIA
Sbjct: 212 MSSVMLPLFLPEGFSIDKLLRAQIAII-------------------------MFAAAYIA 246

Query: 183 EIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIIS 242
           EIVR GL +IP+GQ+E ADS+GL  W + R VI PQ L  + P L    I+L KDTS++ 
Sbjct: 247 EIVRGGLQSIPKGQYEGADSIGLSYWQQMRKVIVPQALKVVIPPLVSTFIALFKDTSLVV 306

Query: 243 LISIQELT-FVGSEIANS--SGLIFEIWLIVGAAYLVLCLTLSMLFKQVEKRSLR 294
           +I I +LT    + +A+   SG   E +L +G  Y   C  +S     +E+   R
Sbjct: 307 IIGIFDLTQSAKAALADPAWSGFGVEAYLFIGLIYFAFCYCISKYSSTLERSLAR 361