Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score =  110 bits (274), Expect = 4e-29
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 23/255 (9%)

Query: 40  IHYQWHWREAWTLIFTPRADGSLPY---FLQGLGATLRLSLWGMVLALVLGSLIGIARSQ 96
           +HY W W     + F P   G   Y    L+GL  T+ LSL    LAL LG + G++R+ 
Sbjct: 1   MHYSWDW----LIFFKPSVTGEGLYGLMLLRGLLWTVALSLLAWTLALGLGLIAGVSRTL 56

Query: 97  KAWFVRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITWL 156
                R  +  ++   RN P LV +F++YF +  +L+PL      L+      +  +T L
Sbjct: 57  PNRAARYLSTVYIHCFRNTPLLVQLFLWYFVVP-ELLPL-EWGNALKQMNPTTNQFLTVL 114

Query: 157 FGPARLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIA 216
            G              + L ++A  AE VRAG+ ++P+ Q +AA +LGL T   YR+VI 
Sbjct: 115 VG--------------LTLYTAAKAAEQVRAGIESVPRSQKQAAMALGLGTAAAYRHVIL 160

Query: 217 PQVLTAITPALAGQTISLIKDTSIISLISIQELTFVGSEIANSSGLIFEIWLIVGAAYLV 276
           PQ L  + P L    +++ K++++   I + ELT    +++  S   FE ++     Y+V
Sbjct: 161 PQALRIVIPPLTSDFLNVFKNSAVALTIGLMELTGQTRQLSEFSAHPFEAFIAATLIYMV 220

Query: 277 LCLTLSMLFKQVEKR 291
           +   + +L + +E+R
Sbjct: 221 ITYGVIVLMRHIERR 235