Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  124 bits (312), Expect = 1e-33
 Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 28/236 (11%)

Query: 63  PYFLQGLGATLRLSLWGMVLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVF 122
           P  L+G   T++LSL   VL LV+       ++    ++R   NA+++++RN P LV +F
Sbjct: 15  PLLLKGTWITIQLSLIATVLGLVVAIFCAWGKTSGPGWLRFIINAYIEVIRNTPFLVQLF 74

Query: 123 IFYFFISNQLIPLLGLDELLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIA 182
            F+F      +P +GL                        W    + ++ + +   AY  
Sbjct: 75  FFFF-----ALPAIGLR-----------------------WSPQTAALVAMVVNLGAYAT 106

Query: 183 EIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIIS 242
           EI+RAG+ +IP+GQ EA  +L L  W  +R+VI    L AI PAL  Q I L+  ++++S
Sbjct: 107 EIIRAGIESIPKGQIEAGRALNLKPWEIFRFVIIKPALKAIYPALTSQFILLMLSSAVVS 166

Query: 243 LISIQELTFVGSEIANSSGLIFEIWLIVGAAYLVLCLTLSMLFKQVEKRSLRHLSR 298
           +IS  +LT V + + + +   FEI+++V A YL L L  S +FK + KR+L +  R
Sbjct: 167 VISADDLTSVAANLQSQTFRSFEIYIVVAAIYLALALAFSAMFKLIYKRTLNYPDR 222