Pairwise Alignments

Query, 278 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 79.7 bits (195), Expect = 6e-20
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 6/235 (2%)

Query: 29  AVASDTPNLDAIKERGTLRVGMSTFVP-WAMRDKQGELIGFEIDVAKRLAADSGWQVEFV 87
           A A+    LD IK+ G +RV ++   P ++  D   +  G ++D A  LA D G ++E V
Sbjct: 21  AQAAMADQLDDIKKAGKVRVAIAMGTPLFSFADANLQPTGSDVDTATALAKDLGVKLEIV 80

Query: 88  PTAWDGIIPALLAKKFDVIIGGMSVTPERSKSVLFTAPYSHSGVQLAANKKLAEGFTQLE 147
                  +P L A++ D++I  +S+TPER K V F+ PY+   + +   K +    T   
Sbjct: 81  SITNAARVPTLQAQRADLVIADLSITPEREKVVDFSVPYAVISIIVGGPKSIK--VTDYA 138

Query: 148 DFNKRNVKIAARRGAFTVQVARETFPKASVLQFDDDAQAFQEVINGNAHAVIASSPKPEH 207
           D N +  +I   R      +  +    A +++++DDA     ++ G    + +S+P    
Sbjct: 139 DLNGK--RIGLTRATVNDTLTTQQAKGAEIVRYEDDATLITSMVTGQID-LFSSTPSNLS 195

Query: 208 ESIKHSDSLFLPFSERLSKGNEAFAVRLGEEDKKAFFDQWIADRTADGWLQARYE 262
           E +K + +  L         +   A+   +   K + + W+     +G L A Y+
Sbjct: 196 EMVKQAPAKNLELKFAQKDFDLGIALNKEQPKLKEWVNNWVVTNQKNGKLNAIYK 250