Pairwise Alignments

Query, 278 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score = 85.1 bits (209), Expect = 1e-21
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 24/259 (9%)

Query: 13  VKTLLTGLLGLAFTLPAVASDTPNLDAIKERGTLRVGMSTFVPWAMRDKQGELIGFEIDV 72
           +K L+   L   F   A A+D  N              +T+ P+   D   +++GF+ID+
Sbjct: 1   MKKLVLAALLATFAAGASAADKINFGV----------SATYPPFESLDASNQIVGFDIDL 50

Query: 73  AKRLAADSGWQVEFVPTAWDGIIPALLAKKFDVIIGGMSVTPERSKSVLFTAPYSHSGVQ 132
           AK L         F   A+D +IP+L  KK+D +I GM +TPERSK V FT PY  +   
Sbjct: 51  AKALCKQMQADCTFTNHAFDSLIPSLKFKKYDAVISGMDITPERSKQVAFTDPYYANSAV 110

Query: 133 LAANKKLAEGFTQLEDFNKRNVKIAARRGAFTVQVARETFPKASVLQFDDDAQAFQEVIN 192
           + A K     F QL     +  +I    G    +  ++  P+   + +D    A  ++ N
Sbjct: 111 VIAKKGAYTSFDQL-----KGKRIGMENGTTHQKYLQDKHPEVKTVAYDSYQNAIIDLKN 165

Query: 193 GNAHAVIASSPKPEHESIKHSDSLFLPFSERLSKGNEAFAVRLG---EEDKKAFFDQW-- 247
           G    V   +    +E +K +  L    +E+++   + F   LG     D KA  ++   
Sbjct: 166 GRIDGVFGDT-AVVNEWLKTNPQLGTA-TEKVT-DPQYFGTGLGIAVRPDNKALLEKLNG 222

Query: 248 -IADRTADGWLQARYEYWF 265
            +    ADG  Q   E WF
Sbjct: 223 ALKAIKADGTYQKISEQWF 241