Pairwise Alignments

Query, 278 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score = 79.7 bits (195), Expect = 6e-20
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 22/258 (8%)

Query: 13  VKTLLTGLLGLAFTLPAVASDTPNLDAIKERGTLRVGMSTFVPWAMRDKQGELIGFEIDV 72
           +K +L  +L    TL A A+ T                +++ P+   D   +++GF++D+
Sbjct: 1   MKKVLLAVLLAGVTLSATAAQTIRFAT----------EASYPPFESIDANNKIVGFDVDL 50

Query: 73  AKRLAADSGWQVEFVPTAWDGIIPALLAKKFDVIIGGMSVTPERSKSVLFTAPYSHSGVQ 132
           A  L  +      F   A+D +IP+L  ++ D ++ GM +TPER K VLFT PY  +   
Sbjct: 51  ANALCKEIDATCTFSNQAFDSLIPSLKFRRIDAVMAGMDITPEREKQVLFTTPYYDNSAL 110

Query: 133 LAANKKLAEGFTQLEDFNKRNVKIAARRGAFTVQVARETFPKASVLQFDDDAQAFQEVIN 192
               K       QL     +  K+  + G    +   +  P+ + + +D    A  ++ N
Sbjct: 111 FIGQKGKFTSVDQL-----KGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQN 165

Query: 193 GNAHAVIASSPKPEHESIKHSDSLFLPFSERLSKGNE-----AFAVRLGEEDKKAFFDQW 247
           G    V   +     E +K +D L  P  ++++  +        AVR G  + +  F+  
Sbjct: 166 GRIDGVFGDTAVVT-EWLKANDKL-APVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNAA 223

Query: 248 IADRTADGWLQARYEYWF 265
           +     DG  +  Y+ WF
Sbjct: 224 LEKVKKDGTYETIYKKWF 241