Pairwise Alignments

Query, 278 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., ABC transporter, substrate binding protein (nopaline) from Agrobacterium fabrum C58

 Score = 86.7 bits (213), Expect = 5e-22
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 38/245 (15%)

Query: 52  TFVPWAMRDKQGELIGFEIDVAKRLAADSGWQVEFVPTAWDGIIPALLAKKFDVIIGGMS 111
           ++ P+  +D  G+LIGF+ID+   L      + +FV  AWDGIIP+L A ++D I+  M 
Sbjct: 38  SYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMG 97

Query: 112 VTPERSKSVLFTAPYSHSGV-------------QLAANKKLAEGFT-----QLEDFNK-- 151
           + P R K + F+ PY  + +             Q+A      +  T     +L+ F K  
Sbjct: 98  IQPAREKVIAFSRPYLLTPMTFLTTADSPLLKTQVAIENLPLDNITPEQKAELDKFTKIF 157

Query: 152 RNVKIAARRGAFTVQVARETFPKASVLQFDDDAQAFQEVINGNAHAVIAS-------SPK 204
             VK   + G       ++  P   +  +D       ++  G   A +AS       + K
Sbjct: 158 EGVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDK 217

Query: 205 PEHESIKHSDSLFLPFSERLSKG----NEAFAVRLGEEDKKAFFDQWIADRTADGWLQAR 260
           P+++ +K        F  R++ G         +R  + D KA FD+ I    ADG +Q  
Sbjct: 218 PDNKDLK-------MFGPRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKL 270

Query: 261 YEYWF 265
            + WF
Sbjct: 271 SQQWF 275