Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  143 bits (361), Expect = 3e-39
 Identities = 81/210 (38%), Positives = 127/210 (60%), Gaps = 10/210 (4%)

Query: 57  WAG--DLLHGLLVTLQLTGISLIFTLALGLTTALLR---QSRSLVGRALGTGYIAVVRNT 111
           W G  DLL G LVT+++T  +L     LGL   + R   + R + G    T Y+A +R T
Sbjct: 9   WQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGAC--TAYVAAIRGT 66

Query: 112 PLLVQIYLLYFVFGPVIG--LDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARS 169
           PLLVQ+++L+F   P  G  L  F   VL L ++ GAY +E+ RG + SI +GQ  AA+S
Sbjct: 67  PLLVQLFILFFGL-PHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQS 125

Query: 170 LGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAM 229
           LG++       ++LPQ + R +PPL NE ++LIKNS++VS++ I D+  +G+ I+S +  
Sbjct: 126 LGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISVSYR 185

Query: 230 PFEIWFSVAAIYLLLTLTLSALSAWLEHKL 259
             E++ ++A +Y +LT T++ +    E KL
Sbjct: 186 SLEVYLAIAVVYFVLTGTMTLILRHFEQKL 215