Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  149 bits (377), Expect = 5e-41
 Identities = 85/204 (41%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 64  GLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYLLYF- 122
           G   T++LT +S +  +  G+  AL + S     R L + YI V+R TPLLVQI  ++  
Sbjct: 57  GTRTTVRLTLVSGLAGILFGVLAALGKLSAFKPARWLASFYIWVIRGTPLLVQILFVFLA 116

Query: 123 --VFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSLGLSRFFTFYD 180
             V  P + LD F +A +ALA   GAY AE  R GL ++P+GQ EA+RSLGLSR +TF+D
Sbjct: 117 LPVLIPALQLDDFTSACVALAFNAGAYNAESIRAGLLAVPRGQTEASRSLGLSRGYTFFD 176

Query: 181 VILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMPFEIWFSVAAI 240
           V+LPQ  + +LPPL N  +SL+K+SS+   + + +LT  G  + + T  P     ++A I
Sbjct: 177 VVLPQAFKVSLPPLVNNFISLLKDSSLAYAIGVVELTNVGNRMQAATFQPLPALATIAVI 236

Query: 241 YLLLTLTLSALSAWLEHKLGAQWR 264
           YLLLT  L+ +S  +E++L  + R
Sbjct: 237 YLLLTTALTQISNAVENRLDVEGR 260