Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  136 bits (343), Expect = 4e-37
 Identities = 92/260 (35%), Positives = 142/260 (54%), Gaps = 19/260 (7%)

Query: 8   RPLLFAALQMMLVFAGLVWL----LDSGAEAMGYTWQWHRVPEYVLIFEDGEWWAGDLLH 63
           R  L +A+ ++ V AG +W+       GA    Y W +  +  Y  +          LL 
Sbjct: 13  RSRLGSAVLVVCVLAG-IWVAVRHFSGGASGTAYDWDFGVLWSYRRL----------LLI 61

Query: 64  GLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYLLYFV 123
           GL  TL  T + ++  LA+GL T L R SR+    A    YI V R TP+LVQ+   Y+ 
Sbjct: 62  GLAYTLVFTVVCVVLGLAIGLITGLGRLSRNPWISAPIRAYIEVFRCTPVLVQLVWFYYA 121

Query: 124 FGPVIGLD--RFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSLGLSRFFTFYDV 181
              + GL+    A A L L+L+ GA+ +E+ RGG+ SI  GQ EAAR+LG++R      +
Sbjct: 122 LPVLTGLEISAVAAATLCLSLYGGAFYSEIVRGGIISIDNGQVEAARALGMTRMQLMRRI 181

Query: 182 ILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMPFEIWFSVAAIY 241
           +LPQ  +R +PPL ++ +  +KN+S++SV+A+ DL  QG+ I  ET  P E++  +A  Y
Sbjct: 182 VLPQAFKRMVPPLMSQSIMQLKNTSLLSVLAVPDLLYQGQVIAHETYRPLELYTFIAVAY 241

Query: 242 LLLTLTLSALSAWLEHKLGA 261
             + L ++  +  +E  LGA
Sbjct: 242 FAVLLPVTIWAKRME--LGA 259