Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 1e-33
 Identities = 75/220 (34%), Positives = 129/220 (58%), Gaps = 13/220 (5%)

Query: 35  MGYTWQWHRVPEYVLIFEDGEWWAGDLLHGLLVTLQLTGISLIFTLALGLTTALLRQSR- 93
           M Y+  +  +  Y  +F +G W          +TL++T ++++  +A+G   A  ++S+ 
Sbjct: 1   MKYSLDFAPLASYWPVFINGAW----------LTLKMTALAVVIGVAVGTLVAFAKRSKI 50

Query: 94  SLVGRALGTGYIAVVRNTPLLVQIYLLYFVFGPV-IGLDRFATAVLALALFQGAYTAEVF 152
            L+ RA  T YI +VRNTP LVQI+LLYF      + +  FA AVLA+ +   AY AE+ 
Sbjct: 51  RLLSRAC-TIYIEIVRNTPFLVQIFLLYFGLASFGVRMPTFAAAVLAMVINIAAYAAEII 109

Query: 153 RGGLNSIPQGQYEAARSLGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMA 212
           R GL S+P+GQ EAA  LGLS++   + V+L   +++  P LT++ + +++ S++ S ++
Sbjct: 110 RAGLESVPRGQIEAAECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQIS 169

Query: 213 IFDLTTQGRNIVSETAMPFEIWFSVAAIYLLLTLTLSALS 252
             +LT     + S+T    E +  VAA+YL+L+L +  ++
Sbjct: 170 AEELTAIANTVQSDTFRSLETYIVVAALYLVLSLFIKLVT 209