Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  123 bits (309), Expect = 3e-33
 Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 2/201 (0%)

Query: 60  DLLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYL 119
           DLLHG  +T+ LT ++++  + LG+  AL+R S S         ++   RN PL++ +Y 
Sbjct: 14  DLLHGAGLTVLLTVLTMLVAVPLGIVLALMRLSSSKALSGASQVFVEFFRNLPLILVVYW 73

Query: 120 LYFVFGPVIGLD--RFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSLGLSRFFT 177
            ++V   ++ ++   F T ++AL L   AY AE FR G+NSI +GQ EAA ++G+SR+  
Sbjct: 74  AFYVMPVLMHIEFSAFTTGLVALCLNVSAYNAETFRAGINSIRKGQMEAAIAMGMSRWQA 133

Query: 178 FYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMPFEIWFSV 237
              V++PQ  +R LP L +  VSL K++S+VSV+A+ +L      I S +    E+  ++
Sbjct: 134 MKKVVIPQAWRRVLPVLASTWVSLFKDTSLVSVIAVGELAHVALQIRSSSFRVLEMLTAM 193

Query: 238 AAIYLLLTLTLSALSAWLEHK 258
           A IY L+    + L  W++ K
Sbjct: 194 AVIYWLMGYPQAKLVDWIQKK 214