Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., predicted transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  128 bits (321), Expect = 1e-34
 Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 5/209 (2%)

Query: 61  LLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYLL 120
           LL G   TLQL+   + F L LG   AL+R S     R L   YI++ R TPL+ Q++++
Sbjct: 15  LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMI 74

Query: 121 YF---VFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSLGLSRFFT 177
           Y+    FG  I LD   +A++ L+L   AY AE  R  ++SI +GQ+EAA S+G++ + T
Sbjct: 75  YYGLPQFG--IELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQT 132

Query: 178 FYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMPFEIWFSV 237
               ILPQ  +  LPPL+N  +SL+K++S+ + + + +L  Q + I S T   F ++ + 
Sbjct: 133 MRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAA 192

Query: 238 AAIYLLLTLTLSALSAWLEHKLGAQWRSP 266
           + IY ++   LS L    E++L  Q R P
Sbjct: 193 SLIYWIMATVLSTLQNHFENQLNRQEREP 221