Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  129 bits (325), Expect = 4e-35
 Identities = 75/209 (35%), Positives = 118/209 (56%), Gaps = 10/209 (4%)

Query: 61  LLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYLL 120
           +L GL +TL+L   SL     +    ALLR S + V   L   Y+ V R TPLLVQI+L+
Sbjct: 13  MLGGLTLTLELIVGSLALGALVAFGVALLRLSGNRVVETLAAAYVFVFRGTPLLVQIFLV 72

Query: 121 YFVFGPVIGL----------DRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSL 170
           Y+  G    +          + +  A+LAL L  GAYT+EV RG + S+PQGQ EAAR+ 
Sbjct: 73  YYGLGQFEFIRDSILWPFLREPYWCAILALTLNTGAYTSEVLRGAILSVPQGQVEAARAC 132

Query: 171 GLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMP 230
           G+SR   F  ++LP  +++ LP   NE++ ++K +S+ S + + ++T   R ++++T   
Sbjct: 133 GMSRALAFRRIVLPVAIRQMLPAYGNEVILMVKATSLASTITLMEVTGIARRMIAQTFAV 192

Query: 231 FEIWFSVAAIYLLLTLTLSALSAWLEHKL 259
           FE++     IYL+L    + L  + E +L
Sbjct: 193 FELFIVAGVIYLVLNFIATRLIKFAEWRL 221