Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  228 bits (581), Expect = 5e-64
 Identities = 137/410 (33%), Positives = 225/410 (54%)

Query: 250 LATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLADAAVSSANFW 309
           + T+ KA QLE+A+ + N +++       A L ++     + A Q+  LA +  S +  W
Sbjct: 132 VVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAASLAQSVFSQSRIW 191

Query: 310 IMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRS 369
           ++ +  ++A V + +     RSI  PL +       +A GD+T  I+   R E   L ++
Sbjct: 192 VIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEISVCGRDEPARLQQA 251

Query: 370 IDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVS 429
           +  + +   + + +I+  S  L + +   + ++E A   + +Q  + +Q A A+ ++  +
Sbjct: 252 LKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQAATAVNQMTAA 311

Query: 430 ATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNI 489
             EVA +          +D  A++GR++V  T    E LA+D+   V     L +    I
Sbjct: 312 VEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQVEDLAQKVYGI 371

Query: 490 GSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMI 549
             +LDVIR IAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA RTQ ST+EI+ MI
Sbjct: 372 SKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQSTQEIEQMI 431

Query: 550 ENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQI 609
             +Q+ + Q V  M +S  + R+ ++  +   +AL+ IA     I E    +A A+++Q 
Sbjct: 432 SGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQA 491

Query: 610 VVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
            V++ V  ++  I ++AH+T   A +++++S  L+ LA     L+A F V
Sbjct: 492 AVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVARFSV 541



 Score = 42.0 bits (97), Expect = 7e-08
 Identities = 108/573 (18%), Positives = 216/573 (37%), Gaps = 100/573 (17%)

Query: 3   LSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQES 62
           L+I  R   GF ++ L++  LG  + L++  +     +V +   P VMAV  + + L   
Sbjct: 6   LNIAPRAGLGFGVLALMVFALGGFALLQMANMRQQSDQVENNWLPSVMAVGDMSQDLLRI 65

Query: 63  NRWVLEFRTSEEAGELPQ------------------------------LSNKFKDQQARF 92
               L    + +   L Q                              L ++FK ++AR+
Sbjct: 66  RALTLRLLVNRDPQALAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKAEEARY 125

Query: 93  RQLSQQMNALTDSTESQKQFQDVLQATNQFYSQ-ADQVLTQHSEWV--NALAQRRKLEIA 149
            +  +Q+  L+ +     Q +D ++  N   +Q AD++     E V  N  +  +   +A
Sbjct: 126 LERQEQVVTLSKA----NQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAASLA 181

Query: 150 FIRLEDTYQWAADLLLQQSSGQRSMRNKAELITSGI----ARDLKNIRRADAKTDLNELE 205
                 +  W   +++  +     +   A L+T  I    A+ LK + +  A  DL    
Sbjct: 182 QSVFSQSRIWVIGMIVLTALVTIGL---AVLLTRSIVLPLAQSLK-VAQGVASGDLTGEI 237

Query: 206 KVLSKD----IEMARKRLDRVLVPDDVKARYIANLNRL----QELA-LGQNGLLATMRKA 256
            V  +D    ++ A K +   L   D   R   + N+L    +EL+ + ++      +++
Sbjct: 238 SVCGRDEPARLQQALKSMQENL--RDTIRRISESSNQLASASEELSCVTEDATRGLHQQS 295

Query: 257 QQLENALLIQNQQVDA--SLASSLAKLDDMAKYAGSIAQQSRMLADAAVSS----ANFWI 310
           Q++E A    NQ   A   +AS+       ++ +  IAQ+ R      V S    A    
Sbjct: 296 QEIEQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVT 355

Query: 311 MAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSI 370
             V+ +      V G +    + + + +  + LA  A  +  R          G   R  
Sbjct: 356 DNVTQVEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARA---------GDAGRGF 406

Query: 371 DILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEV-- 428
            ++AD+            R L +   +S +  E+ ++ +Q+    TDQ  +++ +     
Sbjct: 407 AVVADEV-----------RALAHRTQQSTQEIEQMISGIQQ---GTDQAVSSMQQSNTRA 452

Query: 429 -SATEVARSTDGAKDEV--------DRADAEAKQGRQKVATTRRITEQLASDMESAVGIT 479
            S  ++A+S   A +E+        +R    A    Q+ A  R +   L +  +    + 
Sbjct: 453 RSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQAAVAREVDRNLMNIRD----LA 508

Query: 480 HKLGEFSNNIGSILDVIRGIAEQTNLLALNAAI 512
           H+    +N   +    +  +A   N L    ++
Sbjct: 509 HQTSTGANQTSAASHDLSRLAVDLNTLVARFSV 541