Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  197 bits (502), Expect = 9e-55
 Identities = 120/346 (34%), Positives = 197/346 (56%), Gaps = 3/346 (0%)

Query: 316 ISAAVALVIGYTTARSIQKPLQKINHELAYMARGD--MTRRINYPTRCEFGALSRSIDIL 373
           I   +AL+  +  AR + + L  I + LA +A GD  +TRR++  ++ E G L+   +  
Sbjct: 295 ILLVMALLTSWFVARQLNE-LGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKF 353

Query: 374 ADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEV 433
            D+  +++  +   S  L   A  +A  + +A  R++ Q+ +   VA A+TE+  +  E+
Sbjct: 354 VDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEI 413

Query: 434 ARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSIL 493
           A + +       ++    + G  ++  +++  +QLA ++  AV I  +L   +N I +IL
Sbjct: 414 ASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTIL 473

Query: 494 DVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQ 553
             IRGIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR L+ RT  STEEIQ  I  LQ
Sbjct: 474 STIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQ 533

Query: 554 ESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQ 613
           + +   V VM  S +     V    +  ++LQ+I++ +  I +MA Q+A AA+EQ +V+ 
Sbjct: 534 KVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTA 593

Query: 614 SVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
            +  +   + EV+ +   EA++S   ++ L  +A +  + I+ FK+
Sbjct: 594 DINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 39/309 (12%)

Query: 67  LEFRTSEEAGELPQLSNKFKDQQARF----RQLSQQM-----NALTDSTESQKQFQD--- 114
           L+ R+ +E G L    NKF D+  +     R++S  +     +A   +T++ K+ +    
Sbjct: 335 LDVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQD 394

Query: 115 ----VLQATNQFYSQADQVLTQHSEWVNALAQRRKL-EIAFIRLEDTYQWAADLLLQQSS 169
               V  A  +  S   ++ +          Q  +L E  F +++ + Q + D L Q+ +
Sbjct: 395 EITMVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQ-SIDQLAQELT 453

Query: 170 GQRSMRNKAELITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMAR---KRLDRVLVPD 226
           G   + ++ E+  + I+  L  IR    +T+L      L+  IE AR   +     +V D
Sbjct: 454 GAVRIISELEVHANEISTILSTIRGIAEQTNL----LALNAAIEAARAGEQGRGFAVVAD 509

Query: 227 DVKA---RYIANLNRLQELALGQNGLLAT----MRKAQQLENALLIQNQQVDASL---AS 276
           +V+    R  A+   +Q    G   +  T    M ++ +L    +    Q  ASL   + 
Sbjct: 510 EVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISE 569

Query: 277 SLAKLDDMAKYAGSIA-QQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKP 335
           ++ ++ DMA    S A +QS + AD  V++ +   ++      A   V     A+S+   
Sbjct: 570 AIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQLAEEAQQSV---QQAKSLHAM 626

Query: 336 LQKINHELA 344
            Q++N E++
Sbjct: 627 AQELNKEIS 635