Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  262 bits (669), Expect = 4e-74
 Identities = 206/678 (30%), Positives = 326/678 (48%), Gaps = 40/678 (5%)

Query: 4   SIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQESN 63
           S+++R+ AGF L++++ ++   I    +  I+     VS  A PLV         L  ++
Sbjct: 13  SVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTSVQLLSAD 72

Query: 64  RWVLEFRTSEEAGELPQLSNKFKDQQARFRQ-LSQQMNALTDSTESQKQFQDVLQATNQF 122
           +   +F T+++   +  +  +F   + RF+  L++   A  +  E  +   ++ Q   ++
Sbjct: 73  KSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLETRY 132

Query: 123 YSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSG------QRSMRN 176
           +S+AD  +  +     A A  +K    F RL           +  +         +S   
Sbjct: 133 FSEADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVDDNDSISVKVMAKSYFI 192

Query: 177 K---AELITSGI--ARDLKNIRRA-----DAKTDLNELEKVLSKDIEMARKRLDRVLVP- 225
           K   AE+ITS    + D+  + +A      A T LN   + L+  +   ++R D  +   
Sbjct: 193 KLKDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKERFDEPVAKF 252

Query: 226 -DDV--KARYIANLNR-LQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKL 281
             D+  K   +   N  LQ  A   N +     +  +    L   NQ     L  SLA+ 
Sbjct: 253 TQDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTILGAFNQTATDDLNQSLAE- 311

Query: 282 DDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINH 341
                 AGS+ QQ  + A           + +      +A  IGY  A S+++P+ +I  
Sbjct: 312 ------AGSVYQQGAIKA-----------VVIGIAVVLLATAIGYHIAHSVREPVTRILK 354

Query: 342 ELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEI 401
            L  + +G+MT+RI      EF  LSR I+ LAD   ++L ++N+ S  L   AS +   
Sbjct: 355 TLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTT 414

Query: 402 SERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATT 461
           S  A  ++  Q+ QT  VAAA+TE+  S  EVA S   +   V + +  ++ GRQ ++T 
Sbjct: 415 SLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTN 474

Query: 462 RRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAG 521
                QL + +  +V     L + S+ IGSILDVIR IAEQTNLLALNAAIEAARAG+ G
Sbjct: 475 ISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQG 534

Query: 522 RGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMD 581
           RGFAVVADEVR LA RT  ST EI+ MI NLQ SS    +V+    +     VEQ    +
Sbjct: 535 RGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHAN 594

Query: 582 SALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSE 641
           SA++ I   +  I  M+  ++ AA EQ   + S+A  +  I  ++ E+ +   + A +S 
Sbjct: 595 SAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSA 654

Query: 642 VLADLAAKQQQLIAHFKV 659
            L  LA +Q +L+  FK+
Sbjct: 655 NLTALANQQSELVHRFKL 672