Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  240 bits (613), Expect = 1e-67
 Identities = 146/396 (36%), Positives = 228/396 (57%), Gaps = 8/396 (2%)

Query: 271 DASLASSLAKLDDMAKYAGSIAQQSRMLA-------DAAVSSANFWIMAVSAISAAVALV 323
           +A LAS  A L  M +    + Q S+M+        DAA + A   +   + ++ A+ L+
Sbjct: 244 NAQLASEQA-LQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLL 302

Query: 324 IGYTTARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQ 383
             +   R I  PL++       +A GD+T+ +    R E G L  S+  +     EL+  
Sbjct: 303 AAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGG 362

Query: 384 INAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDE 443
           I  G   + + A   + ++E+  A V  QK +TDQVA A+ ++  +  EVAR+ + A + 
Sbjct: 363 IGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEA 422

Query: 444 VDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQT 503
              AD +A++G + V       E+LAS++ ++    + L   S+ IGS+LDVI+ +A+QT
Sbjct: 423 ALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQT 482

Query: 504 NLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVM 563
           NLLALNAAIEAARAG+AGRGFAVVADEVR+LA RTQ STEEI+ +I  LQ  +++V  VM
Sbjct: 483 NLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVM 542

Query: 564 GRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIA 623
             S++ T + VE TR   S+L++I   + +I+ M  Q+A AA+EQ  V++ +   V  + 
Sbjct: 543 DNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVR 602

Query: 624 EVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
           +++ +T   + E+ASSS  LA L    Q L+  F++
Sbjct: 603 DISDQTSAASEETASSSVELARLGTHLQGLVGRFRL 638



 Score = 48.5 bits (114), Expect = 9e-10
 Identities = 112/516 (21%), Positives = 194/516 (37%), Gaps = 83/516 (16%)

Query: 192 IRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKA----RYIANLNRLQELALGQN 247
           I R D   +++ +++  ++++ +AR++ DR    DD       + ++NL+R  +L LGQ 
Sbjct: 44  IDRGDKLGNISVIQQY-TQELRIARQQYDRRR--DDASLAELEKALSNLDRQVQLMLGQI 100

Query: 248 GLLATMRKAQQLENALLIQNQ------QVDASLASSLAKLDDMAKYAGSI--AQQSRMLA 299
              A  ++ +Q   A+ I  Q      Q D    +S   L   A  A  +    Q  +L 
Sbjct: 101 EQPADHQRLEQQREAVRIYQQAFNELKQADQRREASRDVLGSSADKAVDLIGRVQRSLLQ 160

Query: 300 DAAVSSANFWIMAVSAISAAVALVIGYT---TARSIQKPLQKINHELAYMARGDMTRRIN 356
            A ++     +   + +  A   V GYT    A   Q  L+ I+  LA +      R + 
Sbjct: 161 GANINQYQHAVDVSALLQQARFQVRGYTYSGNADYQQTALKAIDQALAEL------RALP 214

Query: 357 YPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQ---- 412
                E  A   S+D  A   G        G R  V +   +   SE+A+ R+ EQ    
Sbjct: 215 AKVPAEHAA---SLDDAATAMG--------GYRDAVTQFGNAQLASEQALQRMVEQGTVL 263

Query: 413 --------KSQT---DQVAAAITELEVSATEVA-------------------RSTDGAKD 442
                    SQT   D  AA    L   AT +A                   R T  A +
Sbjct: 264 LQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAE 323

Query: 443 EVDRADAEAK---QGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGI 499
            V   D       Q R ++   +    ++   +   +G    +G+    I S  + +  +
Sbjct: 324 RVASGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIG---GIGDGVTQIASAAEELSAV 380

Query: 500 AEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQV 559
            EQT+    N  +E  +   A         EV   A   + ++E      +  +E  + V
Sbjct: 381 TEQTSAGVNNQKVETDQVATAMNQMTATVHEV---ARNAEQASEAALMADQQAREGDRVV 437

Query: 560 VEVMGRSQEQTRACVEQTREMDSALQSIADRMGA----IKEMADQVAHAAQEQIVVSQSV 615
            E + + +      V  +  M + L++ +D++G+    IK +A Q    A    + +   
Sbjct: 438 GEAVAQIERLASEVVNSSEAM-NLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARA 496

Query: 616 AHHVTGIAEVAHETEREARESASSSEVLADLAAKQQ 651
                G A VA E    A+ +  S+E + +L A  Q
Sbjct: 497 GEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQ 532