Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  212 bits (540), Expect = 4e-59
 Identities = 116/364 (31%), Positives = 209/364 (57%), Gaps = 2/364 (0%)

Query: 298 LADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGD--MTRRI 355
           + D+ +++A    + V+ +   +  +I Y  +  + +PL ++ + +A +A GD  +T+R+
Sbjct: 310 IIDSPINNAITTAIIVAFVIIGLIALITYFASAKVTQPLVEMRNAMAEIAHGDGDLTKRL 369

Query: 356 NYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQ 415
              +  E GAL+   +   DK   LL    A ++ + + A    ++S      + +++SQ
Sbjct: 370 EVKSNDEIGALAIEFNTFTDKLRSLLKDTAANTKAVSDAADHLRDVSHATSKEINQERSQ 429

Query: 416 TDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESA 475
            D V+ A+T++  +  E++++   + D   +AD   + G ++V    R    LA  +   
Sbjct: 430 VDNVSTAVTQMAATVVEISKNAAQSSDAATKADELVQAGSEQVQDAMREIRALADAISQG 489

Query: 476 VGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA 535
           V +   L + S++IG+++DVI  IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA
Sbjct: 490 VEVVGGLSKESDSIGAVVDVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 549

Query: 536 TRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIK 595
           +RTQ ST +I+ M+E LQ  S+Q   VM   Q ++++ V++T ++   L+ I   +G + 
Sbjct: 550 SRTQESTTDIRKMVERLQAMSEQTNSVMQEGQTRSQSGVDKTEKVVETLKDITQSIGLVH 609

Query: 596 EMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIA 655
           E +  +A A ++Q  V+Q +   +  I  ++ +T + A E A  +  L+ ++   ++L+ 
Sbjct: 610 EQSTHIALATEQQTEVAQDINKSLVAITGLSDKTSQHAEELAVEATQLSAVSGDLKELVG 669

Query: 656 HFKV 659
            FK+
Sbjct: 670 QFKI 673



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 27/270 (10%)

Query: 195 ADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLN-----------RLQELA 243
           +DA   L ++    SK+I   R ++D V       A  +  ++           +  EL 
Sbjct: 406 SDAADHLRDVSHATSKEINQERSQVDNVSTAVTQMAATVVEISKNAAQSSDAATKADELV 465

Query: 244 -LGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLA-DA 301
             G   +   MR+ + L +A + Q  +V   L+     +  +     SIA+Q+ +LA +A
Sbjct: 466 QAGSEQVQDAMREIRALADA-ISQGVEVVGGLSKESDSIGAVVDVINSIAEQTNLLALNA 524

Query: 302 AVSSA-------NFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRR 354
           A+ +A        F ++A    S A       T  R + + LQ ++ +   + +   TR 
Sbjct: 525 AIEAARAGEQGRGFAVVADEVRSLASRTQESTTDIRKMVERLQAMSEQTNSVMQEGQTRS 584

Query: 355 INYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKS 414
            +   + E     + ++ L D T + +  ++  S H+     +  E+++     +     
Sbjct: 585 QSGVDKTE-----KVVETLKDIT-QSIGLVHEQSTHIALATEQQTEVAQDINKSLVAITG 638

Query: 415 QTDQVAAAITELEVSATEVARSTDGAKDEV 444
            +D+ +    EL V AT+++  +   K+ V
Sbjct: 639 LSDKTSQHAEELAVEATQLSAVSGDLKELV 668