Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  216 bits (549), Expect = 3e-60
 Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 6/361 (1%)

Query: 305 SANFWIMAVSAISAAVALVIGYTTA----RSIQKPLQKINHELAYMAR--GDMTRRINYP 358
           SAN  +++   I A V  ++ + TA    R I++ +  +   L  +A+  GD+T RI   
Sbjct: 179 SANTSLISTGVILAVVVTILLFGTAVPIVRGIKQSIDDVVRSLKDIAQENGDLTVRIETK 238

Query: 359 TRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQ 418
           +  E G L    +   DK   ++  +   S  L N A     ++E     +  Q+     
Sbjct: 239 SEDEIGELVYWFNQFMDKLQGVVRDVVEASLPLSNLAQNLRGVTEETQRTIDVQQKSATN 298

Query: 419 VAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGI 478
              A+  +  S   VA S   A  + + A   A++GRQ V  T    +QLA ++     +
Sbjct: 299 AKRAVDTMSGSVDGVAHSAAQAASDANEATTAAREGRQIVQQTVTSIQQLAENVRETADV 358

Query: 479 THKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRT 538
             +L   SN +GS+LDVI+GIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+RT
Sbjct: 359 IARLESDSNKVGSVLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT 418

Query: 539 QTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMA 598
           Q STEEIQ  IE LQ ++   VEVM R  EQ  + VE   +  S+L++I   +G I +M 
Sbjct: 419 QQSTEEIQSTIEQLQNAAHSAVEVMSRGTEQATSSVETANKAGSSLETITSTIGRINQMN 478

Query: 599 DQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFK 658
           +Q+AH  ++Q  V+  +  HV  I E   +T   + E  S    LADLA   + +   F+
Sbjct: 479 EQIAHNTEDQRTVAVDIVRHVDEIHERTEQTASRSGELGSMCNELADLAQHLESIAKQFR 538

Query: 659 V 659
           V
Sbjct: 539 V 539



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 71/400 (17%), Positives = 144/400 (36%), Gaps = 86/400 (21%)

Query: 9   IIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQESNRWV-- 66
           I  G +L +++ ILL   +   +RGI   + +V          V  LK+  QE+      
Sbjct: 185 ISTGVILAVVVTILLFGTAVPIVRGIKQSIDDV----------VRSLKDIAQENGDLTVR 234

Query: 67  LEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATNQFYSQA 126
           +E ++ +E GEL    N+F D                   + Q   +DV++A+    + A
Sbjct: 235 IETKSEDEIGELVYWFNQFMD-------------------KLQGVVRDVVEASLPLSNLA 275

Query: 127 DQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAELITSGIA 186
             +     E    +  ++K      R  DT   + D +   ++   S  N          
Sbjct: 276 QNLRGVTEETQRTIDVQQKSATNAKRAVDTMSGSVDGVAHSAAQAASDAN---------- 325

Query: 187 RDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLNRL------- 239
                    +A T   E  +++ + +   ++  + V    DV AR  ++ N++       
Sbjct: 326 ---------EATTAAREGRQIVQQTVTSIQQLAENVRETADVIARLESDSNKVGSVLDVI 376

Query: 240 -----QELALGQNGLLATMRKAQQLE---------NALLIQNQQVDASLASSLAKLDDMA 285
                Q   L  N  +   R  +Q             L  + QQ    + S++ +L + A
Sbjct: 377 KGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEEIQSTIEQLQNAA 436

Query: 286 KYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAY 345
             A  +  +    A ++V +AN    ++  I++ +  +              ++N ++A+
Sbjct: 437 HSAVEVMSRGTEQATSSVETANKAGSSLETITSTIGRI-------------NQMNEQIAH 483

Query: 346 MARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQIN 385
                 T  ++     +   +    +  A ++GEL S  N
Sbjct: 484 NTEDQRTVAVDIVRHVD--EIHERTEQTASRSGELGSMCN 521