Pairwise Alignments

Query, 458 a.a., carbohydrate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 57.4 bits (137), Expect = 9e-13
 Identities = 90/411 (21%), Positives = 163/411 (39%), Gaps = 56/411 (13%)

Query: 19  ASELVIESWRADDKALWEQKIIPAFEAANPGIKVKFNPVPNVNYTPTLWENLKA---GKA 75
           A ++ +  W  D        +I  F A N GIK+++     + +   + E+++A   G A
Sbjct: 26  AEDVTLTLWSLDRDIQPAPNLIKEFNALNNGIKIEYR---QLQFDDVVSESMRAYSTGNA 82

Query: 76  GDLITCRPFDDSLALFKA-GHLAEITEMAGMENF---PSFAQAPWQTDS-GAQTFCVPMA 130
            D+I     + + A+F + G   ++T+M    +     ++   P ++ +   + F VP A
Sbjct: 83  PDIIAID--NPNHAMFASRGAFLDVTDMIAKSDVIKTENYFPGPLKSVTWDGKYFGVPKA 140

Query: 131 SVIHGFFYNKKIFNELGLSV---PQTREQFFTVLDKVKADGRYIPLSMSGSESWVASELG 187
           +     +YNK +F   GL     PQT ++      K+    + +      S S  A+E G
Sbjct: 141 TNTIALYYNKDLFKAAGLDAAKPPQTWDELVDAARKLTNPAKNV---YGISFSAKANEEG 197

Query: 188 YQNIGPNYWKGEDGRLALINGQEHLDDSQYVKVFEELARWRAYLGE-----DGELRDYGT 242
                P  W    G        ++++    VK  E    W+  L E     D   R    
Sbjct: 198 TFQFLP--WAQMAGAT-----YKNINTDGAVKALET---WKTLLDEKLASPDTLTRSQWD 247

Query: 243 SNELFTSGKAALYVAGSWEIAPFTD--KVDFGVMRPPVAKQGDGCFFTDHTDIGMGMNPA 300
           S   F +G AA+ ++G WEI       K D+GV   PV    D    +   D    +   
Sbjct: 248 STATFNAGNAAMAISGPWEIDRMLKDAKFDWGVTLLPVPTP-DAPRSSAMGDYNWAIFSK 306

Query: 301 SKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTNPAAREMMEWRDQCDSTIR 360
           +K+P  A   +++  + +  +++ N     F       D+  P     ++     D  ++
Sbjct: 307 TKHPAEAFKAIEFFASKD-KDMFKN-----FGQLPARSDIPVPPTGNALK-----DEALK 355

Query: 361 VATQILSRGQP--------KLGDELAEVSQAVLVGKMTPTAAAERLEQGLK 403
              + L   QP        K+   + +  Q  L G+MTP AA ++  + +K
Sbjct: 356 TFVEQLKYAQPRGPSPEWPKISKAIQDAIQGALSGQMTPKAALDQAAEKIK 406