Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  268 bits (685), Expect = 4e-76
 Identities = 184/547 (33%), Positives = 297/547 (54%), Gaps = 17/547 (3%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           +N+ I  +  + F  I  + L  G +  N +  I+    ++T  ++PS+  ++       
Sbjct: 4   RNMNIAPRAFLGFAFIGALMLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQLTL 63

Query: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMPVKNLWN 124
            +R     LL++ +     + +       QQI      YE+ I +  ER+ +       +
Sbjct: 64  RLRVLSYRLLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAAY-------D 116

Query: 125 EYLRQLGSFNN-DILQKEMIKAQQ-DLQRSLPTFEKLETAIDELLKLNLSYVDNNRSELT 182
           +Y+R LG ++  +   K + +A Q +  RSL   E L  +      L      NN+  L 
Sbjct: 117 DYVRLLGQYHQIEERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLLDINNKMALA 176

Query: 183 ELIDNISEFSVA--SIVALLAFMSAVT----WLLTNLICSPLMQVVTQANAIAEGNLAHR 236
              D   ++++A   +V+LL   + +T    WLLT  I  P+ Q +  A  +AEGNL   
Sbjct: 177 TNKDAEDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAEEVAEGNLTRP 236

Query: 237 LDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQ 296
           +  K  G DE G L  A +KMQ+ LR  ++ I  SATQLA A +E++AV++++++G+  Q
Sbjct: 237 I--KVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQ 294

Query: 297 QEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEI 356
             E+ Q ATA+ EM S V EVARN    S+ASR+++  A  G   ++    +I+ ++ ++
Sbjct: 295 NNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDV 354

Query: 357 GRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 416
             T   + +L ++++ I  V+DVI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 355 QATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVR 414

Query: 417 SLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSS 476
           +LA +TQQST +I  +I ++QA  + A ++  NS E     +  ++    +++ I     
Sbjct: 415 ALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIV 474

Query: 477 QIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQD 536
           +I +  + IASA  EQ  V+ E+ RN+  I + + Q A G+S  + + +ELS+LA  L  
Sbjct: 475 EINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNG 534

Query: 537 TVQRFRL 543
            V RFRL
Sbjct: 535 MVGRFRL 541