Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  229 bits (585), Expect = 2e-64
 Identities = 173/550 (31%), Positives = 276/550 (50%), Gaps = 23/550 (4%)

Query: 5   KNLAIGKKIAVAFGV--IALINLAFGGYLYNSLHTIKSDVLNLTDDTLPS----MMLVNG 58
           K L   ++I + F +  +AL+ L F  Y  + L T+K     +     P     M++  G
Sbjct: 2   KQLTTAQRIVIGFAIAPLALVGLVF--YALHDLATLKQQSEQIVQQDWPKIAPIMVIATG 59

Query: 59  IKYNMSSVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMP 118
           ++ N  + R     LL   D  +  E I       Q+I +  +  E  + T   ++ +  
Sbjct: 60  VRDNGRNTR----DLLIDQDNQQAQEAIGGTR---QRITEAFATLEPLLDTAEGKAAYAT 112

Query: 119 VKNLWNEYLRQLGSFNNDILQKEMIKAQQDL-QRSLPTFEKLETAIDELLKLNLSYVDNN 177
           +K     Y+         I Q    +    L Q+ +P    +  ++D L+ +        
Sbjct: 113 LKTHREAYVAAFTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAER 172

Query: 178 RSELTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQA----NAIAEGNL 233
                 L D      +   +  LA + A   ++T  +  PL     +A    + IA+G+L
Sbjct: 173 EQAAQVLYDEARRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDL 232

Query: 234 AHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGM 293
              +    +G+   G +     +MQ NL  MV  I TS   +A + +E+SAVS QTS  +
Sbjct: 233 TIVVP---VGNSAEGSVMRNLHQMQQNLNQMVRHIATSVDGVASSSEELSAVSSQTSSSL 289

Query: 294 QIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVN 353
           Q Q +E+ Q ATA+ EM + V EVARN    S+ASR S Q A  G  Q++    SI  + 
Sbjct: 290 QSQGQEIEQAATAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLA 349

Query: 354 QEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 413
             +  T +R+ +L  + Q I+ V++VI +IA+QTNLLALNAAIEAARAG+ GRGFAVVAD
Sbjct: 350 TGVVETSERIQQLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVAD 409

Query: 414 EVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRH 473
           EVR+LA +TQ ST +I ++I N++   + A    ++S E +   +  +Q + +A+++I  
Sbjct: 410 EVRALAHRTQASTQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITR 469

Query: 474 QSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQ 533
             SQI +  + IASA  EQ  V+ E+ RN+  I   ++QV QG+     +  +L+ +A  
Sbjct: 470 SISQINERNMMIASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGA 529

Query: 534 LQDTVQRFRL 543
           L  TV RF++
Sbjct: 530 LHQTVARFKV 539