Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  256 bits (654), Expect = 2e-72
 Identities = 177/538 (32%), Positives = 279/538 (51%), Gaps = 3/538 (0%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           + L I  +  + F  IAL+ +  G +  N +  I+   + +T   LPS+  +  I  N+ 
Sbjct: 4   RQLNIAPRAFLGFAFIALLVILLGVFAVNRMAQIRQSSVEMTATQLPSVTSLGVITENVL 63

Query: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMPVKNLWN 124
            +R     +L + + A + E    +     ++    + Y        E +++       +
Sbjct: 64  RLRILSFRVLVNREPASLQEAETRIGVLVDKVKTAQASYAALPAGPEEAALYKTFMVTLD 123

Query: 125 EYLRQLGSFNNDILQKEMIKAQQDLQRSLPT-FEKLETAIDELLKLNLSYVDNNRSELTE 183
            YL+          Q ++ + +  +   +    +++   +++L+ +N++      ++  +
Sbjct: 124 NYLKAQADMLALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIAINVADAKTADTDAGQ 183

Query: 184 LIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKTIG 243
             D      +A  VA       + WLLT  I +PL + V  A  IA GNL+  ++    G
Sbjct: 184 SYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETIAGGNLSKAIEDD--G 241

Query: 244 HDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQI 303
            DE   L  A + MQ NLR  ++ I  SATQLA A +E+SAV+E+ S+G+Q Q  E+ Q 
Sbjct: 242 KDEPARLLGALATMQANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNNEIDQA 301

Query: 304 ATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRV 363
           ATA+ EM + V EVARN    S+AS  S+Q A  G  ++     +IQ + Q++  T   +
Sbjct: 302 ATAVNEMTAAVEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQTMTQDVQNTAAMI 361

Query: 364 LELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQ 423
             L +Q + I  V+DVI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T 
Sbjct: 362 EGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTA 421

Query: 424 QSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTI 483
           QST +I +++  +Q    +A ++   S +     +E ++    A+EQI    S I +  +
Sbjct: 422 QSTQEIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLINERNL 481

Query: 484 QIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRF 541
            IASA  EQ  VS E+ RN+  I + A Q A G++  + +  ELS+LA  L   V RF
Sbjct: 482 VIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLAVDLNGMVARF 539