Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  246 bits (628), Expect = 2e-69
 Identities = 170/541 (31%), Positives = 286/541 (52%), Gaps = 9/541 (1%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           ++L I  +  + FGV+AL+  A GG+    +  ++     + ++ LPS+M V  +  ++ 
Sbjct: 4   RSLNIAPRAGLGFGVLALMVFALGGFALLQMANMRQQSDQVENNWLPSVMAVGDMSQDLL 63

Query: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMPVKNLWN 124
            +R   + LL + D   +A++ + + +    + +  + Y+  I    E+ +F   K    
Sbjct: 64  RIRALTLRLLVNRDPQALAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKAEEA 123

Query: 125 EYLR---QLGSFNNDILQKEMIKAQQDLQRSLPTFEKLETAIDELLKLNLSYVDNNRSEL 181
            YL    Q+ + +     ++ I+        L   +++   + EL+ LN +   N  + L
Sbjct: 124 RYLERQEQVVTLSKANQLEDAIRVVNGEMNQLA--DEMAATLRELVTLNKTSA-NQAASL 180

Query: 182 TELIDNISEFSVASIVALLAFMS-AVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRK 240
            + + + S   V  ++ L A ++  +  LLT  I  PL Q +  A  +A G+L   +   
Sbjct: 181 AQSVFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEIS-- 238

Query: 241 TIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEV 300
             G DE   L  A   MQ NLR  +  I  S+ QLA A +E+S V+E  ++G+  Q +E+
Sbjct: 239 VCGRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEI 298

Query: 301 MQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTE 360
            Q ATA+ +M + V EVA N    S ASR+S + A  G +Q++    SI+ +  ++    
Sbjct: 299 EQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNV 358

Query: 361 QRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAG 420
            +V +L  +   I+ V+DVI +IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA 
Sbjct: 359 TQVEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAH 418

Query: 421 KTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIAD 480
           +TQQST +I ++I  +Q    +A  +   S       ++ ++    A+E+I    + I +
Sbjct: 419 RTQQSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINE 478

Query: 481 MTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQR 540
             + IASA  +Q +V+ E+ RN+  I + A Q + G++  + +  +LS+LA  L   V R
Sbjct: 479 RNLVIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVAR 538

Query: 541 F 541
           F
Sbjct: 539 F 539