Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  238 bits (606), Expect = 7e-67
 Identities = 175/519 (33%), Positives = 277/519 (53%), Gaps = 30/519 (5%)

Query: 41  DVLN--LTDD---TLPSMMLVNGIKYNMSSVRRAQIS--LLSSTDEAEIAEDIRWMNDH- 92
           DVL   L DD   TL       G ++   + + AQ+S  +L + DEA +  +     +  
Sbjct: 142 DVLQAGLADDGVYTLKQSQGQQGGEFLEQAAQVAQVSRLMLQAMDEARVRLEKSRKGEEG 201

Query: 93  --YQQIAQDL------SRYERSIWTDHERSIFMPVKNLWNEYLRQLGSFNNDILQKEMIK 144
              ++IAQ +      S+ + ++     +S+   V      +  +L  + + + +++ +K
Sbjct: 202 VSQERIAQTVEAAGLVSQLQGAVGDAGYQSVLGEVAGHIGSFSEKLNEYTDQLAREQGLK 261

Query: 145 AQQDLQRSLPTFEKLETAIDELLKLNLSYVDNNRSELTELIDNISEFSVASIVALLAFMS 204
           AQ  LQ S    E++   +D+      +Y+   ++   EL  N     +A+ +ALL  + 
Sbjct: 262 AQ--LQASA---ERVTGRVDQ------AYLGQEQALQGELQRNAIAIGLATALALLVGVL 310

Query: 205 AVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKTIGHDELGELADACSKMQNNLRLM 264
           A  WL+T  +  PL  V+ +A  IA G L    D +    DE+G+L  A  +M   L  +
Sbjct: 311 AA-WLITRAVVGPLKHVIARAQRIAAGELG--FDAQAPRRDEVGQLMQAMQQMAAGLSGI 367

Query: 265 VEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVA 324
           V  +     QLA +   +S V+EQT++ +  Q+EE  Q+ATAM +M +TV +VARN E A
Sbjct: 368 VSGLQQGIEQLAGSAQALSTVTEQTNREVGSQKEETEQVATAMQQMTATVHDVARNAEEA 427

Query: 325 SDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIA 384
           + A++ + +  + G Q +R     I+ +          +  L ++   I  V++VI ++A
Sbjct: 428 AQAAQAADEKVDTGQQVVRQSMQRIEQLASAAEAASAGIDSLSAEIHTIGDVLEVIKSVA 487

Query: 385 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKAR 444
           EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T+QST  I  ++ +L+  AQ++ 
Sbjct: 488 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALARRTRQSTEQIETLVASLRGNAQQSV 547

Query: 445 ETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIE 504
                S EL+   V  + +T+ A+  I    S I  M  QIA+A  +Q SV+EE+SR++ 
Sbjct: 548 AQIRGSTELVRLAVADALQTESALGSIAAAVSLIQQMNQQIAAAAEQQSSVAEEISRSVT 607

Query: 505 RINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFRL 543
           +I  SA Q A      A+S  EL+QL + L+  V  FRL
Sbjct: 608 QIRGSADQAALAMQDNARSSVELAQLGTDLKGMVGHFRL 646



 Score = 42.7 bits (99), Expect = 4e-08
 Identities = 82/443 (18%), Positives = 181/443 (40%), Gaps = 54/443 (12%)

Query: 127 LRQLGSFNNDILQKEMIKAQQDLQRSLPTFEKLETAIDELLK--LNLSYVDNNRSELTEL 184
           LRQL  FN D+L+    +    L+  +   + L   +  L++    L  +   +++L   
Sbjct: 50  LRQLAQFNTDLLRLREHEQAFALRSDMQQADALRGGLQGLVERARGLPALAAAQTDLAAY 109

Query: 185 IDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKTIGH 244
                 F V ++ A    +   +W ++N+  S  + V+ QA    +G    +  +   G 
Sbjct: 110 GQAFEAF-VEAVQAKELALDMASWSVSNV--SNNLDVL-QAGLADDGVYTLKQSQGQQG- 164

Query: 245 DELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQ-IQQEEVMQI 303
              GE  +  +++    RLM++           A+DE     E++ +G + + QE + Q 
Sbjct: 165 ---GEFLEQAAQVAQVSRLMLQ-----------AMDEARVRLEKSRKGEEGVSQERIAQT 210

Query: 304 ATA---MAEMKSTVAEVARNTEVASDASR--DSSQHANVGSQQM---RAVNDSIQHVNQE 355
             A   +++++  V +    + +   A      S+  N  + Q+   + +   +Q   + 
Sbjct: 211 VEAAGLVSQLQGAVGDAGYQSVLGEVAGHIGSFSEKLNEYTDQLAREQGLKAQLQASAER 270

Query: 356 I-GRTEQRVL----ELESQAQQINMVVDVISNIAEQTNLLA--------------LNAAI 396
           + GR +Q  L     L+ + Q+  + + + + +A    +LA              + A  
Sbjct: 271 VTGRVDQAYLGQEQALQGELQRNAIAIGLATALALLVGVLAAWLITRAVVGPLKHVIARA 330

Query: 397 EAARAGEQG-RGFAVVADEVRSLAGKTQQSTGDIVEII----QNLQACAQKARETTNNSR 451
           +   AGE G    A   DEV  L    QQ    +  I+    Q ++  A  A+  +  + 
Sbjct: 331 QRIAAGELGFDAQAPRRDEVGQLMQAMQQMAAGLSGIVSGLQQGIEQLAGSAQALSTVTE 390

Query: 452 ELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAK 511
           +       Q +ET+Q    ++  ++ + D+      A     +  E++    + + +S +
Sbjct: 391 QTNREVGSQKEETEQVATAMQQMTATVHDVARNAEEAAQAAQAADEKVDTGQQVVRQSMQ 450

Query: 512 QVAQGSSSAAQSCAELSQLASQL 534
           ++ Q +S+A  + A +  L++++
Sbjct: 451 RIEQLASAAEAASAGIDSLSAEI 473