Pairwise Alignments

Query, 416 a.a., maltoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., D-trehalose outer membrane porin (from data) from Pseudomonas simiae WCS417

 Score =  124 bits (312), Expect = 4e-33
 Identities = 124/442 (28%), Positives = 184/442 (41%), Gaps = 68/442 (15%)

Query: 4   TMKKVSVIAAAVAATLAAGSAFAVDFNGYFRAGTGISGNGNADQAVNKAGTG---RLGNE 60
           T  K+ ++A+ +     A    A++F GY R+G G S      Q     G     RLGNE
Sbjct: 3   TTIKLGLVASCLGLPFGAQ---ALEFAGYLRSGAGTSTGSGPQQCFQLPGAQTKYRLGNE 59

Query: 61  NDNYYEFGFAEELKTGEQ--TWKVESMIAQGNS-----GANGWEDGDFNVAQFNVQAKGL 113
            + Y E    ++L T +      V++M +  N         G  +G   + Q   Q   L
Sbjct: 60  CEQYAELELRQDLLTLDDGSVLSVDAMASLYNKYDRALKFQGENNGSARMPQMYAQWSNL 119

Query: 114 LASDQEAVMWAGKRYYQRKDIHITDFYFLNTSGTGGGIENLSVGNQKLSVALVQDGDNTN 173
             S     +WAG+RYY+R DIHI+DFY+ N S TGGGIE++ +G+ K S A+ +  DN  
Sbjct: 120 -PSLNGGSLWAGRRYYKRNDIHISDFYYWNQSATGGGIEDVLIGDLKYSYAISRK-DNLY 177

Query: 174 SSGYI--FDARLANIGLWENASLELAMAYNFATEKDSKNEVADDGVLVSAILHQGLSNGF 231
              Y    D  +A         LEL ++Y    EK    +      L +  + +    G 
Sbjct: 178 QKEYATRHDFNVAGFKTNPGGELELGLSY---IEKAGGRDTNSGWALTAQHVQKPFLGGK 234

Query: 232 NQTVFQYGTAGYGAQAANFWGAGSYYARGTEAFNDASGFRLLNWGVINLGENWEMGHQLA 291
           N+   QYG            G G  Y   T     +  +R + +       +W++  +  
Sbjct: 235 NKFALQYGEGP---------GTGLGYTGNTFLDKSSKSYRAVEF------FDWQVTPR-- 277

Query: 292 YLAGSDIGGQFGGDGANKNTYTGKSFDIDQYSVVVRPMYKWNDTMRTVFEAGYNAGEKIS 351
                  GGQ   +   +      S D    S+ VRP Y  ++  + V E G++  +  +
Sbjct: 278 ------FGGQI--EAVYQKDIRPGSQDQTWMSLGVRPAYAISEQFKLVTELGHDQVD--A 327

Query: 352 NGGLATEDFGNAKFTVAQAWA-MGDSFWARPELRVYGTYLL------DTENDKAFGD--D 402
            GG        +KFT A  W+  G  FWARPE+R+Y TY           N+ A G    
Sbjct: 328 TGGTRK----LSKFTFAPTWSPKGPEFWARPEVRLYYTYATWNKAAKRAANELAAGSALS 383

Query: 403 DTEFV--------VGIQVEAWW 416
           DT           VG+QVE WW
Sbjct: 384 DTGSYGTARHGSNVGVQVEYWW 405