Pairwise Alignments

Query, 385 a.a., sel1 repeat family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 57.4 bits (137), Expect = 6e-13
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 119 EKAKFWQTCVRGVEGDLAAKFETGMAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMG 178
           EKA +W   +   +G   A++  G  +   +    +  + I  +++AA      A   +G
Sbjct: 47  EKAFYWLK-LAAEQGHCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALG 105

Query: 179 GWCVSKDNIAPTPSDSTFWYEKAARMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERAS 238
            W + +   AP   ++  WY+ AA  G +     LG    +G G A D+ +A +W ++A+
Sbjct: 106 -WTLDRGE-APNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAA 163

Query: 239 EKGHPEAMYHAGEAWID-RG-AHGKAIAYIWLFLSASMGYEPAK 280
            +GH +A  +  + + D +G A  K +A  W   SA  G   A+
Sbjct: 164 LQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQ 207



 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 83  KEALFWYEKAAHLDNIPAMYGIVRVCQRIREDVIAKEKAKFWQTCVRGVEGDLAAKFETG 142
           ++A +W + AA   +  A Y + +     +      E+A FW      ++G   A     
Sbjct: 47  EKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKA-ALQGHTFAS--NA 103

Query: 143 MAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMGGWCVSKDNIAPTPSDSTFWYEKAA 202
           + W   RG   N    +   Q AAE+    A   +G    + + +A   + + FWY++AA
Sbjct: 104 LGWTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAA 163

Query: 203 RMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGHPEAM------YHAGE 251
             G ++    L      G G A +  +A +W  +++++G+  A       Y+AGE
Sbjct: 164 LQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE 218



 Score = 47.0 bits (110), Expect = 8e-10
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 162 IQEAAEANFIDAILFMGGWCVSKDNIAPTPSDST--FWYEKAARMGSAEGMMRLGQNLLH 219
           I E AE    +A  ++ G+  ++D+   +P D    +W + AA  G  E    LGQ    
Sbjct: 16  IIERAEKGDCEA-QYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKYTE 74

Query: 220 GIGGASDFPMACYWLERASEKGHPEAMYHAGEAW-IDRG-AHGKAIAYIWLFLSASMGYE 277
                 D   A +WL++A+ +GH  A    G  W +DRG A     A +W  ++A  G  
Sbjct: 75  DKSRHKDNEQAIFWLKKAALQGHTFASNALG--WTLDRGEAPNYKEAVVWYQIAAESGMS 132

Query: 278 PAKN 281
            A+N
Sbjct: 133 YAQN 136



 Score = 44.3 bits (103), Expect = 5e-09
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 50/235 (21%)

Query: 48  ERNREQERKERLFKAESGHIPTILFLAK-------EAERNSLKEALFWYEKAAHL----- 95
           +++R ++ ++ +F  +   +    F +          E  + KEA+ WY+ AA       
Sbjct: 75  DKSRHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEAPNYKEAVVWYQIAAESGMSYA 134

Query: 96  -DNIPAMYGIVRVCQRIREDVIAKEKAK--FW--QTCVRG---VEGDLAAKFETGMAWLY 147
            +N+  MY           + +AK+ A   FW  Q  ++G    + +LA  +E G     
Sbjct: 135 QNNLGWMYR--------NGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDG----- 181

Query: 148 GRGVEVNVSRGIGLIQEAAE-----ANFIDAILFMGGWCVSKDNIAPTPSDSTFWYEKAA 202
            +GV  N +       ++A+     A F  A  +  G  V +D        + +WY KAA
Sbjct: 182 -KGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDY-----KQAMYWYLKAA 235

Query: 203 RMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGHPEA------MYHAGE 251
             GS    + +G    HG G   D+  A  W  +A+E     A      MYH GE
Sbjct: 236 AQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGE 290