Pairwise Alignments

Query, 452 a.a., 3-methyladenine DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., helix-turn-helix domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  316 bits (809), Expect = 1e-90
 Identities = 189/471 (40%), Positives = 265/471 (56%), Gaps = 31/471 (6%)

Query: 11  VCQRARMSRDPRFDGRFFVAVKTTGIFCRPICPANLPKEENVEYFSSQALAVSAGYRPCL 70
           VC++AR+SRD RFDG FF AV +TGI+CRP+CPA  PK ENV Y+++ A A +AG+RPCL
Sbjct: 12  VCEQARLSRDARFDGLFFTAVSSTGIYCRPVCPAPTPKRENVHYYANAAAAEAAGFRPCL 71

Query: 71  RCRPESAPHSWAWKGAETTFLRALTLIEQGEL-DGSLETLASRLGISDRYLRQLFQRHLG 129
           RCRPE AP +  W+  +    RAL LIE G L + SL+ LA+R+GI  R LR+LF   +G
Sbjct: 72  RCRPELAPGNEQWQRGDHVVARALKLIEAGALAEQSLDALAARVGIGARQLRRLFVERVG 131

Query: 130 MPPKQYAQIQQLMFAKQLLHTSQISITEVAYASGFQSTRRFNDAFQKLFRLTPTQVRRE- 188
             P      ++L+FAKQLL  + + +TEVA ASGF+S RRFN AF +  R+ P ++RR  
Sbjct: 132 AAPISVHTTRRLLFAKQLLTETALPVTEVALASGFRSLRRFNAAFAQANRIAPRELRRHP 191

Query: 189 RAALPSRNHLSLAFRGPFDWAHMLDFYRLRAIEGMELIDEQSYQRHFVLGEGTGWFKASM 248
            AA  +   L L +R P+D+  +L F R RA+ G+EL+DE+SY R F   +  GW + S 
Sbjct: 192 HAAAGTALLLRLGYRPPYDFPRLLAFLRTRALPGVELVDERSYARVFGPADAPGWLRLSA 251

Query: 249 ---AQSHLDIEFEMERLSDLRHLVARLRRMFDLDADLISIEAHLEQ---LAPGLVRRTGI 302
               +  L ++    + + L  +V  LRRMFDLDA+  +I     +   L P + R  G+
Sbjct: 252 WPGGEHALQLQLHCPQPTRLLGVVTTLRRMFDLDANPQAITDTFGRDAVLGPLVARHPGL 311

Query: 303 RIPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVS------TLAASEGSTRYFPTPEQVQ 356
           R+PG W+ +E  VRA+LGQQVSV AA      +V         A   G  R FPTP  + 
Sbjct: 312 RLPGGWDGFEIAVRAILGQQVSVAAARTLATRIVQRWGEPLPAAPLPGLERLFPTPAALA 371

Query: 357 MSDLSFLRMPERRKETLKRLA--------DYVRLHPMDSPMA-WLSLSGIGPWTVDYAQL 407
            +DL  + +   R  T+  +A        D+     +D+ ++ W+ L GIG WT  Y  +
Sbjct: 372 QADLREIGLTAARAATVSTMAQALLDGRVDFSAGQSLDAFVSRWVVLPGIGEWTAHYIAM 431

Query: 408 RGESRSHCFLTGDLIVKKALA--------KFPQLTAESVAPWGSYATFHCW 450
           R       F   DLI+++  A        K     A +  PW +YA  H W
Sbjct: 432 RALGAPDAFPAADLILRREAATDAVPLSTKALTACANAWRPWRAYAVIHLW 482