Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

 Score =  160 bits (404), Expect = 6e-44
 Identities = 117/364 (32%), Positives = 173/364 (47%), Gaps = 56/364 (15%)

Query: 1   MKKAAIAVAVLSAVV-----------SGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDK 49
           M K  IA+AV +A V           SG    +TVY A+GTSL+VGGR E R        
Sbjct: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLK---- 65

Query: 50  GEEIEGTMLNKSRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMY 109
               +G   + SRVRLN  G+ +I   + G GF+E E         ++    +   RY Y
Sbjct: 66  ----DGKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNN--SLDNRYTY 119

Query: 110 VGMKGDFGSLSFGRQNTAGVQISDMSDIGTFTGDQKAFVSAGNEQINNTIAYGYDFESFK 169
            G+ G +G +++G+ + A   I+D +DI ++ G+  A   A  ++++N +AY   F    
Sbjct: 120 AGIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLG 179

Query: 170 LKASYIADDQ--------------------KNADGYGLSGIYS-APFGLDIGLGYAANDL 208
           +KASY   D+                       DGY LS IY+    G ++G GYA    
Sbjct: 180 VKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYA---- 235

Query: 209 GTDKGSADQIIAGLGYTMGDLYFGATYTTGDKDDKADTEFTGIEVSAQYKITKEFRLIAA 268
             D+   ++ +    Y M +LYF   +T G+     D ++TG E++A YK+  +    A 
Sbjct: 236 --DQDDQNEYMLAASYRMENLYFAGLFTDGEL--AKDVDYTGYELAAGYKL-GQAAFTAT 290

Query: 269 YQNQEEETKNVTKDKADFFELTGRYDFTKNFRSYLAYKANGLD-DKDAGYKVEDTIRLGL 327
           Y N E       +  AD F +   Y F  NFRSY++Y+ N LD DK      ED + +GL
Sbjct: 291 YNNAE----TAKETSADNFAIDATYYFKPNFRSYISYQFNLLDSDKVGKVASEDELAIGL 346

Query: 328 RYDF 331
           RYDF
Sbjct: 347 RYDF 350