Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Outer membrane pore protein E precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 90.1 bits (222), Expect = 7e-23
 Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 53/367 (14%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLE---FRGDFNGNDKGEEIEGTM 57
           M K+ +A+ V+S + S S  AA VY+  G  L V G+++   +  D++  D         
Sbjct: 1   MNKSTLAI-VVSIIASASVHAAEVYNKNGNKLDVYGKVKAMHYMSDYDSKDG-------- 51

Query: 58  LNKSRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDF 116
            ++S VR    GET I   + G+G WEAE     +   S++Q+T    R  + G+K  D 
Sbjct: 52  -DQSYVRFGFKGETQINDQLTGYGRWEAEFASNKAESDSSQQKT----RLAFAGLKLKDI 106

Query: 117 GSLSFGRQNTAGVQISDMSDI-GTFTGDQKAFV-------SAGNEQINNTIAYGYDFESF 168
           GS  +GR   A   +   +D+   F GD  A         ++G     NT  +G   +  
Sbjct: 107 GSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGI-VDGL 165

Query: 169 KLKASYIADDQ------KNADGYGLSGIYSAPFG---LDIGLGYAANDLGTD-----KGS 214
            L   Y   ++      +N DG+G S  Y   FG     +   Y  +D   +     +G+
Sbjct: 166 DLTLQYQGKNEDRDVKKQNGDGFGTSVSYD--FGGSDFAVSGAYTLSDRTREQNLQRRGT 223

Query: 215 ADQIIA---GLGYTMGDLYFGATYTTGDKDDKADTEFT----GIEVSAQYKITKEFRLIA 267
            D+  A   G+ Y   D+Y    Y+           F       E   QY+     R   
Sbjct: 224 GDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQFDFGLRPSL 283

Query: 268 AY-QNQEEETKNV-TKDKADFFELTGRYDFTKNFRSYLAYKANGLD-DKDAGYKVEDTIR 324
            Y  ++ ++ + V ++D  ++ ++   Y F KN  +++ YK N LD D   G   +D + 
Sbjct: 284 GYVLSKGKDIEGVGSEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNTLGINDDDIVA 343

Query: 325 LGLRYDF 331
           +GL Y F
Sbjct: 344 IGLTYQF 350