Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Outer membrane porin protein NmpC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  106 bits (264), Expect = 1e-27
 Identities = 103/376 (27%), Positives = 156/376 (41%), Gaps = 59/376 (15%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLE---FRGDFNGNDKGEEIEGTM 57
           MK   +AVAV S + +G   AA VY+ +G  L + G++    +  D NG+D         
Sbjct: 1   MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDG-------- 52

Query: 58  LNKSRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDF 116
            +K+  RL   GET I   + GFG WE E     +     +++   K R  + G+K  D+
Sbjct: 53  -DKTYARLGFKGETQINDQLTGFGQWEYEFKGNRTESQGADKD---KTRLAFAGLKFADY 108

Query: 117 GSLSFGRQNTAGVQISDMSDI-GTFTGD----QKAFV---SAGNEQINNTIAYGYDFESF 168
           GS  +GR       I   +D+   F GD       F+   + G     NT  +G   E  
Sbjct: 109 GSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDFFGL-VEGL 167

Query: 169 KLKASYIADD------QKNADGYGLSGIYSAPFGLDIGLGY-----------AANDLGTD 211
              A Y   +      + N DG+GLS  Y    G  +G  Y           AA++L   
Sbjct: 168 NFAAQYQGKNDRDGAYESNGDGFGLSATYEYE-GFGVGAAYAKSDRTNNQVKAASNLNAA 226

Query: 212 KGSADQIIAGLGYTMGDLYFGATY------TTGDKDDKAD----TEFTGIEVSAQYKITK 261
             +A+   AGL Y   ++Y   TY      TT  +D   D     +    E  AQY+   
Sbjct: 227 GKNAEVWAAGLKYDANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDF 286

Query: 262 EFRLIAAYQNQEEETKNV--TKDKADFFELTGRYDFTKNFRSYLAYKANGLDDKD----A 315
             R   AY   + +       +D  ++ ++   Y F KN  +++ YK N LDD D    A
Sbjct: 287 GLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKINLLDDSDFTKAA 346

Query: 316 GYKVEDTIRLGLRYDF 331
               ++ + +GL Y F
Sbjct: 347 KVSTDNIVAVGLNYQF 362