Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Outer membrane protein C precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 97/394 (24%), Positives = 159/394 (40%), Gaps = 79/394 (20%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK   +++ V + +V+G+  AA +Y+ +G  L + G+++    F+ +DKG + + T +  
Sbjct: 1   MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFS-DDKGSDGDQTYM-- 57

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
              R+   GET +   + G+G WE +       G  TE       R  + G+K  D GS 
Sbjct: 58  ---RIGFKGETQVNDQLTGYGQWEYQ-----IQGNQTEGSNDSWTRVAFAGLKFADAGSF 109

Query: 120 SFGRQNTAGVQISDMSDI-GTFTGDQKAFVSAGNEQINNTIAY----------GYDFE-S 167
            +GR       ++  +D+   F GD     +   ++ N    Y          G DF   
Sbjct: 110 DYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQ 169

Query: 168 FKLKASYIADD--------QKNADGYGLSGIYSAPFGLDIGLGYAANDLGTDKGSADQ-- 217
           ++ K   ++ +         +N DGYG S  Y+   G  +G       + T K +ADQ  
Sbjct: 170 YQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVG-----GAITTSKRTADQNN 224

Query: 218 ---------------IIAGLGYTMGDLYFGATY----------TTGDKDDKADTEFT--- 249
                             GL Y   ++Y  A Y          T+   +      F    
Sbjct: 225 TANARLYGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKA 284

Query: 250 -GIEVSAQYKITKEFRLIAAY-QNQEEETKN------VTKDKADFFELTGRYDFTKNFRS 301
              EV AQY+     R   AY Q++ ++  N        +D   + ++   Y F KN  +
Sbjct: 285 QNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMST 344

Query: 302 YLAYKANGLD----DKDAGYKVEDTIRLGLRYDF 331
           Y+ YK N LD     +DAG   +D + LGL Y F
Sbjct: 345 YVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF 378