Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Outer membrane protein N precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  102 bits (253), Expect = 2e-26
 Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 74/391 (18%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK+  +A+ + + + +G+  AA +Y+ +G  L + G+++    F+ +D  ++ + T +  
Sbjct: 1   MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFS-DDSSKDGDQTYM-- 57

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
              R+   GET I   + G+G WE      ++ G      T    R  + G+K GD+GS 
Sbjct: 58  ---RVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWT----RLAFAGLKFGDYGSF 110

Query: 120 SFGRQNTAGVQISDMSD-IGTFTGDQKAFV-------SAGNEQINNTIAYGY-DFESFKL 170
            +GR       +   +D +  F GD   +        + G     NT  +G  D  +F L
Sbjct: 111 DYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFFGLVDGLNFAL 170

Query: 171 KASYIADDQ------------------KNADGYGLSGIYSAPFGLDIGLGYAAND----- 207
           +     ++Q                   N DG+G+S  Y    G+  G  Y  +D     
Sbjct: 171 QYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQ 230

Query: 208 -----LGTDKGSADQIIAGLGYTMGDLYFGATYTT-------GDKDDKA--DTEFTGIEV 253
                 G DK  AD    G  Y   ++Y    Y+        G+ D ++    +    EV
Sbjct: 231 VNYSTAGGDK--ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEV 288

Query: 254 SAQYKITKEFRLIAAYQNQEEETKNVT--------KDKADFFELTGRYDFTKNFRSYLAY 305
           +AQY+   +F L  A      + K++T        KD   + ++   Y F KNF +Y+ Y
Sbjct: 289 TAQYQF--DFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDY 346

Query: 306 KANGLDD-----KDAGYKVEDTIRLGLRYDF 331
           K N LDD     KDAG   +D + LG+ Y F
Sbjct: 347 KINLLDDDDQFYKDAGISTDDIVALGMVYQF 377