Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., outer membrane porin 1a (Ia;b;F) (NCBI) from Escherichia coli BW25113

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 40/366 (10%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK+  +AV V + +V+G+  AA +Y+ +G  + + G+      F+  + GE   G   + 
Sbjct: 2   MKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGN-GENSYGGNGDM 60

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           +  RL   GET I + + G+G WE      +S G   + +T  K R  + G+K  D GS 
Sbjct: 61  TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEG--ADAQTGNKTRLAFAGLKYADVGSF 118

Query: 120 SFGRQNTAGVQISDMSDIGTFTGDQKAFVS-------AGNEQINNTIAYGYDFESFKLKA 172
            +GR           +D+    G   A+          G     N+  +G   +      
Sbjct: 119 DYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGL-VDGLNFAV 177

Query: 173 SYIADDQK------NADGYGLSGIYS-APFGLDIGLGYA-------ANDLGTDKGSADQI 218
            Y+  +++      N DG G S  Y    FG+    G A       A  LG  K  A+Q 
Sbjct: 178 QYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGK-KAEQW 236

Query: 219 IAGLGYTMGDLYFGATYTTGDKDDKADTEFTG----------IEVSAQYKITKEFRLIAA 268
             GL Y   ++Y  A Y           +FT           + + AQY+     R   A
Sbjct: 237 ATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIA 296

Query: 269 Y-QNQEEETKNV-TKDKADFFELTGRYDFTKNFRSYLAYKANGLD-DKDAGYKVEDTIRL 325
           Y +++ ++ + +   D  ++FE+   Y F KN  +Y+ Y  N +D D   G   +DT+ +
Sbjct: 297 YTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAV 356

Query: 326 GLRYDF 331
           G+ Y F
Sbjct: 357 GIVYQF 362