Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., porin OmpC from Erwinia amylovora T8

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 98/377 (25%), Positives = 156/377 (41%), Gaps = 55/377 (14%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK   +++ V + + +GS  AA +Y+ EG  L + G+++    F+ N   +       +K
Sbjct: 1   MKLRVLSLMVPALLAAGSAGAAEIYNKEGNKLDLFGKVDGLHYFSNNSDSDG------DK 54

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           S +RL   GET I   + G+G WE +  + ++    T    T   R  + G+K GD GS 
Sbjct: 55  SYMRLGFKGETQISDLLTGYGQWEYQAALNTTEAEGTANSFT---RVGFAGLKFGDAGSF 111

Query: 120 SFGRQNTAGVQISDMSDI------GTFTGDQKAFVSAGN-------------EQINNTIA 160
            +GR       I   +D+       T+  D   F                  + +N  I 
Sbjct: 112 DYGRNYGVLYDIGAWTDVLPEFGGDTYGADNFMFQRGSGMATYRNNNFFGLVDGLNFAIQ 171

Query: 161 YGYDFESFKLKASYIADDQKNADGYGLSGIYSAPFGLDIGLGYAAND------LGTDKGS 214
           Y    +S    A   +   +N DGYGLS  Y    G   G    + D       G+  G 
Sbjct: 172 YQGKNDSNAEVAGNRSAVAQNGDGYGLSATYELAPGFSAGAAMFSADRTDTQNRGSLSGK 231

Query: 215 ADQIIA---GLGYTMGDLYFGATYTT-------GDKDDKADTEFT----GIEVSAQYKIT 260
            D+  A   GL Y   DLY  A YT        G  ++ A   F       E+ AQY+  
Sbjct: 232 GDKAEAYSGGLKYDAKDLYLAALYTKSFNATRFGSSNNLAAYGFADKAQNWELVAQYQFD 291

Query: 261 KEFRLIAAY-QNQEEETKN-VTKDKADFFELTGRYDFTKNFRSYLAYKANGLDDKD---- 314
              R   +Y  ++ ++ +N  +++   + E+   Y F KN  +Y+ Y+ N LD  D    
Sbjct: 292 FGLRPSLSYVTSRGDDIQNWGSQNLKQYIEVGAAYYFNKNMSTYVDYQINLLDKNDFTKA 351

Query: 315 AGYKVEDTIRLGLRYDF 331
           AG   ++ + +GL Y F
Sbjct: 352 AGINTDNVMAVGLVYQF 368