Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score =  102 bits (253), Expect = 2e-26
 Identities = 100/369 (27%), Positives = 164/369 (44%), Gaps = 57/369 (15%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MKK+ +A+ V+  V S S  AA VY+  G  L V G+++    +  +D  ++ + T    
Sbjct: 1   MKKSTLALMVMGVVASASVHAAEVYNKNGNKLDVYGKVKAM-HYISDDATKDGDQTY--- 56

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
             VR    GET I   + G+G WE+E      AG   E +++ K R  + G+K  +FGSL
Sbjct: 57  --VRFGFKGETQINDQLTGYGRWESE-----FAGNKAESDSSQKTRLAFAGLKLKNFGSL 109

Query: 120 SFGRQNTAGVQISDMSDI-GTFTGDQKAFV-------SAGNEQINNTIAYGYDFESFKLK 171
            +GR   A   +   +D+   F GD  A         + G     NT  +G   +   + 
Sbjct: 110 DYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRATGLATYRNTDFFGA-VDGLDMT 168

Query: 172 ASYIADDQ------KNADGYGLSGIYSAPFGLDIGLGYAANDLGTDKGSADQIIA----- 220
             Y   ++      +N DG+G S  Y    G D  +  A  +  +D+ +A  ++A     
Sbjct: 169 LQYQGKNENRDAKKQNGDGFGTSLTYDFG-GSDFAVSGAYTN--SDRTNAQNLLARGQGQ 225

Query: 221 -------GLGYTMGDLYFGATYT--------TGDKDDKADTEFTGIEVSAQYKITKEFRL 265
                  GL Y   D+Y  A Y+        +G   +KA       EV AQY+     R 
Sbjct: 226 KAEAWATGLKYDANDIYLAAMYSETRNMTPISGGFANKAQN----FEVVAQYQFDFGLRP 281

Query: 266 IAAY-QNQEEETKNV-TKDKADFFELTGRYDFTKNFRSYLAYKANGLDDKD-AGYKVEDT 322
              Y Q++ ++ + +  +D   + ++   Y F KN  +++ YK N +DDK+  G   +D 
Sbjct: 282 SLGYVQSKGKDIEGIGDEDLVKYIDVGATYYFNKNMSTFVDYKINQIDDKNKLGVSSDDI 341

Query: 323 IRLGLRYDF 331
           + LG+ Y F
Sbjct: 342 VALGMTYQF 350