Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score =  100 bits (250), Expect = 4e-26
 Identities = 102/375 (27%), Positives = 156/375 (41%), Gaps = 59/375 (15%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGR---LEFRGDFNGNDKGEEIEGTM 57
           MK   +AVAV S + +G   AA +Y+ +G  L + G+   L +  D   ND         
Sbjct: 1   MKLKLVAVAVTSMLAAGVVNAAEIYNKDGNKLDLYGKVTGLHYFSDDTDNDG-------- 52

Query: 58  LNKSRVRLNVAGETDIGAGMKGFGFWEAE-QGVKSSAGTSTEQETTFKQRYMYVGMK-GD 115
            +K+ VRL   GET I   + G+G WE E +G +S +  S   +T    R  + G+K  +
Sbjct: 53  -DKTYVRLGFKGETQINDQLSGYGQWEYEFKGNRSESQGSDGSKT----RLAFAGLKFNE 107

Query: 116 FGSLSFGRQNTAGVQISDMSDI-GTFTGD----QKAFV---SAGNEQINNTIAYGYDFES 167
           FGS  +GR       I   +D+   F GD       F+   + G     NT  +G   + 
Sbjct: 108 FGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDGFMTGRTTGVATYRNTDFFGL-VDG 166

Query: 168 FKLKASYIADDQK------NADGYGLSGIYSAPFGLDIGLGYA--------------AND 207
             + A Y   + +      N DG+GLS  Y    G  +G  YA              AN 
Sbjct: 167 LNVAAQYQGKNDRNDITEANGDGWGLSSTYEMD-GFGVGATYAKSDRTDRQVAAGRVANT 225

Query: 208 LGTDKGSADQIIAGLGYTMGDLYFGATYT-----TGDKDDKADTEFTGIEVSAQYKITKE 262
           +     +A+   AGL Y   ++Y   TY+     T         +    EV AQY+    
Sbjct: 226 VNAGGENAEVWAAGLKYDANNIYLATTYSETRNMTNFGSGYIANKAQNFEVVAQYQFDFG 285

Query: 263 FRLIAAYQNQEEETKNV--TKDKADFFELTGRYDFTKNFRSYLAYKANGLDD----KDAG 316
            R   AY   + +       +D  ++ ++   Y F KN  +Y+ YK N +DD    K  G
Sbjct: 286 LRPSIAYLKSKGKDLGSYGDQDLVEYVDVGASYYFNKNMSTYVDYKINLVDDNSFTKATG 345

Query: 317 YKVEDTIRLGLRYDF 331
              ++ + +GL Y F
Sbjct: 346 VATDNIVAVGLTYQF 360