Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score =  107 bits (267), Expect = 5e-28
 Identities = 102/379 (26%), Positives = 166/379 (43%), Gaps = 58/379 (15%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           M++  +A+ + + +++GS  AA +Y+ +G  L + G+++    F+ N KG + + T +  
Sbjct: 1   MQRKVLALMIPALLMAGSAHAAEIYNKDGNKLDLYGKVDGLHYFSDN-KGADGDQTYM-- 57

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
              RL   GET I   M G+  WE      ++ G+  +  T    R  + G+K GD+GS 
Sbjct: 58  ---RLGFKGETQINNTMTGYAQWEYNIQANNTEGSDNQSWT----RLAFAGVKVGDYGSF 110

Query: 120 SFGRQNTAGVQISDMSD-IGTFTGDQKA----FVSA---GNEQINNTIAYG-YDFESFKL 170
            +GR       +   +D +  F GD       F++    G     NT  YG     +F L
Sbjct: 111 DYGRNYGVLYDVEGWTDMLPEFGGDSYTKADNFMTGRANGVATYRNTDFYGLVQGLNFAL 170

Query: 171 KASYIADD---------------QKNADGYGLSGIYSAPFGLDIGLGYAAND------LG 209
           +     +D                +N DG+G+S  Y    G+  G  Y ++D      + 
Sbjct: 171 QYQGKNEDASNNQEGTNNGRDTRHENGDGFGISTTYDFGMGITAGAAYTSSDRTNEQVMN 230

Query: 210 TDKG--SADQIIAGLGYTMGDLYFGATYTT-------GDKDDKADTEFTGIEVSAQYKIT 260
           T  G   AD   AGL Y   ++Y  A Y+        GD  D    +    EV+AQY+  
Sbjct: 231 TTAGGDKADAWTAGLKYDANNIYLAAMYSETRNMTPYGDNTDAVANKTQNFEVTAQYQFD 290

Query: 261 KEFRLIAAY-QNQEEETKN--VTKDKADFFELTGRYDFTKNFRSYLAYKANGLDD----- 312
              R   +Y Q++ ++  N    +D   + ++   Y F KN  +Y+ YK N LD+     
Sbjct: 291 FGLRPSLSYLQSKGKDLGNGQGDQDLVKYADVGVTYYFNKNMSTYVDYKINLLDEDDNFY 350

Query: 313 KDAGYKVEDTIRLGLRYDF 331
           KD G   +D + LGL Y F
Sbjct: 351 KDNGISTDDVVALGLVYQF 369