Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score = 97.8 bits (242), Expect = 4e-25
 Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 83/397 (20%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGN--DKGEEIEGTML 58
           MK+  +A+ V + +++G+  AA +Y+  G  + + G+++ R  F+ N  D G+E      
Sbjct: 1   MKRKVLAIVVPALLMAGAANAAEMYNKNGNKVDLYGKVDARHTFSDNPGDDGDE------ 54

Query: 59  NKSRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFG 117
             + V++   GET I   + G+G WE +    ++ G   +       R  Y G+K G++G
Sbjct: 55  --TYVQVGFKGETRIANDLIGYGQWEYKTFANNTEGAGDKSFN----RLAYAGLKYGEYG 108

Query: 118 SLSFGRQNTAGVQISDMSD-IGTFTGDQKAFV-SAGNEQINNTIAY-GYDF----ESFKL 170
           S  +GR       +   +D +  F GD   +  +  N + N    Y   DF    E    
Sbjct: 109 SFDYGRNYGVVYDVEAWTDMLPVFGGDSYTWTDNFMNGRANGLATYRNQDFFGLVEGLNF 168

Query: 171 KASY--------IADDQK------------NADGYGLSGIYSAP---FGLDIGLGYAAND 207
              Y          +DQ+            N DG+G+S  Y       GL +G  Y+++D
Sbjct: 169 ALQYQGANEGQDATEDQEGTKNGHDDVRFQNGDGFGMSTSYDFAGDLSGLSLGAAYSSSD 228

Query: 208 LGTDKGSADQIIAGLGYTMGDLYFGATYTTGDKDDKAD-------------TEFTGIEVS 254
              ++ +  +   G+GY  GD      +T G K D  +             T    + ++
Sbjct: 229 RTNEQVAYGKAAEGIGYAGGDK--AEAWTVGAKYDANNVYLAMMYAETRNMTPIGNVGIA 286

Query: 255 AQYKITKEFRLIAAYQ---------------NQEEETKNVTKDKADFFELTGRYDFTKNF 299
            Q   T+ F  +A YQ                ++ + K   +D  ++ +L   Y F KNF
Sbjct: 287 NQ---TQNFEAVAQYQFDFGLRPSLAWVYSKGKDLDGKGFNQDLVNYIDLGMTYSFNKNF 343

Query: 300 RSYLAYKANGLDDKDA-----GYKVEDTIRLGLRYDF 331
            +Y+ YK N LD+ +A     G   +D + +G+ Y F
Sbjct: 344 STYVDYKINMLDNDEALYDAYGISTDDIVGVGMTYQF 380