Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Outer membrane protein N from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 94/389 (24%), Positives = 154/389 (39%), Gaps = 70/389 (17%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK   +A+ + + + +G+  AA VY+ +G  L + G+++    F+ N   +       ++
Sbjct: 1   MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDG------DQ 54

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           S  RL   GET I   + G+G WE      ++  +  +  T    R  + G+K  D+GS 
Sbjct: 55  SYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWT----RLAFAGLKFADYGSF 110

Query: 120 SFGRQNTAGVQISDMSD-IGTFTGDQKAFVSAGN---EQINNTIAY-GYDF----ESFKL 170
            +GR       I   +D +  F GD  ++ +A N    + N    Y   DF         
Sbjct: 111 DYGRNYGVMYDIEGWTDMLPEFGGD--SYTNADNFMTGRANGVATYRNTDFFGLVNGLNF 168

Query: 171 KASYIADDQ-----------------KNADGYGLSGIYSAPFGLDIGLGYAANDLGTDK- 212
              Y  +++                 +N DG+GLS  Y    G   G  Y ++D   D+ 
Sbjct: 169 AVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQV 228

Query: 213 -------GSADQIIAGLGYTMGDLYFGATYTT-------GDKDDKADTEFTGIEVSAQYK 258
                    AD   AGL Y   ++Y    Y+        GD D     +    EV+AQY+
Sbjct: 229 NHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQ 288

Query: 259 ITKEFRLIAAYQNQEEETKNVT-----------KDKADFFELTGRYDFTKNFRSYLAYKA 307
                R   ++   +    +             KD   + ++   Y F KN  +Y+ YK 
Sbjct: 289 FDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATYYFNKNMSTYVDYKI 348

Query: 308 NGLDDKDA-----GYKVEDTIRLGLRYDF 331
           N LD+ D+     G   +D + LGL Y F
Sbjct: 349 NLLDEDDSFYAANGISTDDIVALGLVYQF 377