Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Outer membrane porin C 2 from Escherichia coli ECRC98

 Score =  102 bits (254), Expect = 1e-26
 Identities = 95/382 (24%), Positives = 155/382 (40%), Gaps = 67/382 (17%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK   +AV V   + +    AA VY+ +G  L + G++     F  + + +       +K
Sbjct: 1   MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDG------DK 54

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAE-QGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGS 118
           +  RL   GET I   M GFG WE + +G    A  S + +T    R  Y G+K  +FGS
Sbjct: 55  TYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRDNKT----RLAYAGLKISEFGS 110

Query: 119 LSFGRQNTAGVQISDMSDI----GTFTGDQK----------------------------- 145
           L +GR    G  I   +D+    G  T  QK                             
Sbjct: 111 LDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDFFGLIEGLNFA 170

Query: 146 AFVSAGNEQINNTIAYGYDF-----ESFKLKASYIADDQKNADGYGLSGIYSAPFGLDIG 200
           A     NE+ +N+  YG D+     + F + ++Y+ D      G+G+  +Y+     +  
Sbjct: 171 AQYQGKNERTDNSHLYGADYTRANGDGFGISSTYVYD------GFGIGAVYTKSDRTNAQ 224

Query: 201 LGYAANDLGTDKGSADQIIAGLGYTMGDLYFGATYT-----TGDKDDKADTEFTGIEVSA 255
              AAN L     +A+    G+ Y   ++YF A Y      T   D     +    EV A
Sbjct: 225 ERAAANPLNASGKNAELWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVA 284

Query: 256 QYKITKEFRLIAAYQNQE--EETKNVTKDKADFFELTGRYDFTKNFRSYLAYKANGLDDK 313
           QY+     R   AY   +  +  +   +D  ++ ++   Y F KN  +Y+ YK N +D+ 
Sbjct: 285 QYQFDFGLRPSLAYLKSKGIDLGRYGDQDMIEYIDVGATYFFNKNMSTYVDYKINLIDES 344

Query: 314 D----AGYKVEDTIRLGLRYDF 331
           D       + ++ +  G+ Y F
Sbjct: 345 DFTRAVDIRTDNIVATGITYQF 366