Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., porin OmpF from Escherichia coli ECRC100

 Score = 90.1 bits (222), Expect = 7e-23
 Identities = 95/368 (25%), Positives = 152/368 (41%), Gaps = 44/368 (11%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK+  +AV V + +V+G+  AA +Y+ +G  + + G+      F+  + GE   G   + 
Sbjct: 2   MKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGN-GENSYGGNGDM 60

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           +  RL   GET I + + G+G WE      +S G   + +T  K R  + G+K  D GS 
Sbjct: 61  TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEG--ADAQTGNKTRLAFAGLKYADVGSF 118

Query: 120 SFGRQNTAGVQISDMSDIGTFTGDQKAFVS-------AGNEQINNTIAYGYDFESFKLKA 172
            +GR           +D+    G   A+          G     N+  +G   +      
Sbjct: 119 DYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGL-VDGLNFAV 177

Query: 173 SYIA----DDQKNADGYGLSGIYSAPF-GLDIGLGYAAND---------LGTDKGSADQI 218
            Y+     D  + ++G G+ G  S  + G  I   Y A D         LG  K  A+Q 
Sbjct: 178 QYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQLLGNGK-KAEQW 236

Query: 219 IAGLGYTMGDLYFGATYTTGDKDDKADTEFTGIEVSAQYKITKEFRLIAAYQ-------- 270
             GL Y   ++Y  A Y           +FT I   A    T++  L+A YQ        
Sbjct: 237 ATGLKYDANNIYLAANYGETRNATPITNKFTNISGFANK--TQDVLLVAQYQFDFGLRPS 294

Query: 271 --NQEEETKNV----TKDKADFFELTGRYDFTKNFRSYLAYKANGLD-DKDAGYKVEDTI 323
               + + K+V      D  ++FE+   Y F KN  +Y+ Y  N +D D   G   +DT+
Sbjct: 295 IAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTV 354

Query: 324 RLGLRYDF 331
            +G+ Y F
Sbjct: 355 AVGIVYQF 362