Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., porin OmpC from Escherichia coli ECOR27

 Score = 84.3 bits (207), Expect = 4e-21
 Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 60/379 (15%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK   +++ V + +V+G+  AA VY+ +G  L + G+++    F+ N   ++++G   ++
Sbjct: 1   MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDN---KDVDG---DQ 54

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           + +RL   GET +   + G+G WE +       G S E E     R  + G+K  D GS 
Sbjct: 55  TYMRLGFKGETQVTDQLTGYGQWEYQ-----IQGNSAENENNSWTRVAFAGLKFQDVGSF 109

Query: 120 SFGRQNTAGVQISDMSDI-----GTFTGDQKAFVSAGN--EQINNTIAYG---------- 162
            +GR       ++  +D+     G   G        GN      NT  +G          
Sbjct: 110 DYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQ 169

Query: 163 YDFESFKLKASYIADD-----QKNADGYGLSGIYSAPFGLDIGLGYAANDLGTDKGSADQ 217
           Y  ++  +    + ++     ++N DG G S  Y    G  IG   +++     + +A  
Sbjct: 170 YQGKNGSVSGEGMTNNGRDALRQNGDGVGGSITYDYE-GFGIGAAVSSSKRTDAQNTAAY 228

Query: 218 I---------IAGLGYTMGDLYFGATYTTGDKDDKADT-----EFTGIEVSAQYKITKEF 263
           I           GL Y   ++Y  A YT      +  +     +    E  AQY+     
Sbjct: 229 IGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGL 288

Query: 264 RLIAAYQNQEEETKNVT-------KDKADFFELTGRYDFTKNFRSYLAYKANGLDD---- 312
           R   AY   + +            +D   + ++   Y F KN  +Y+ YK N LDD    
Sbjct: 289 RPSVAYLQSKGKNLGTIAGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFT 348

Query: 313 KDAGYKVEDTIRLGLRYDF 331
           +DAG   ++ + LGL Y F
Sbjct: 349 RDAGINTDNIVALGLVYQF 367