Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., HTH-type transcriptional activator RhaR from Xanthobacter sp. DMC5

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 122 VYDP---ELASQLRLVFETLEKSTNRLLRETLI---YASLVKLMTRHGRTAPQADQPLSA 175
           V DP   +LA  +  V    E  ++++  + L    YA +V+  T  GR++   +   +A
Sbjct: 130 VNDPLLEQLALSVLTVLRDREDGSSQIYADELAHAAYAHVVRSYTTAGRSSRIGEDTGAA 189

Query: 176 LRPLL-LVKEFLDDFPQADVSLEELAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLA 234
              LL  V E + D    ++ L+ LA  AGLSP  L R F ++FG+  H Y +  R+  A
Sbjct: 190 PEHLLHRVCEMIADRLAEELPLDLLACEAGLSPRSLSRVFNRRFGMSVHQYILSQRILRA 249

Query: 235 KTLL-KQGVSISETAQECGFHDQSHLHRHFKKALGITP 271
           K LL    + I+E A E GF  QSHL   F+K +G+TP
Sbjct: 250 KELLISTDLPIAEVALETGFSSQSHLAATFRKHMGVTP 287



 Score = 26.2 bits (56), Expect = 9e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 179 LLLVKEFL--DDFPQADVSLEELAQLAGLSPFHLVRTFQKQFGLPPHAYQ 226
           +L  KE L   D P A+V+LE        S  HL  TF+K  G+ P  ++
Sbjct: 246 ILRAKELLISTDLPIAEVALET----GFSSQSHLAATFRKHMGVTPGLFR 291