Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., HTH-type transcriptional activator RhaS from Pseudomonas sp. DMC3

 Score =  134 bits (338), Expect = 2e-36
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 6/258 (2%)

Query: 23  GLELLDAQYETQNFSRHSHEGYTVGVIERGAQSFYRTGGNHIAPQDSIILVNADEVHTGH 82
           G+E + A +    +  H H+ + VGV E+G Q F      H +    + L+   E+H GH
Sbjct: 16  GIESIRAHFRGHAYDPHWHDSFLVGVTEQGVQQFNCRRVRHRSTPGHVFLLEPGEIHDGH 75

Query: 83  SAVEGGWAYKAMYPLPE----QFATVAKEIGANTGAPYFPQAVVYDPELASQLRLVFETL 138
           +  E G+ Y  +Y  P     +   + +E  A++  P F   + +DP L++ +   F  L
Sbjct: 76  APTEDGFTYSMLYLDPHWLERELHALFEEAPADS-QPGFADTLSHDPHLSTAIVQAFHVL 134

Query: 139 EKSTNRLLRETLIYASLVKLMTRHGRTAPQADQPLSALRPLLLVKEFLDDFPQADVSLEE 198
                R++R+T +   L  L TRH     + D          + +++L      D+ L++
Sbjct: 135 HDGDLRIVRQTALDGLLASL-TRHLDWRKRQDFDPRLPLVAQVARDYLHAHTYEDIGLDD 193

Query: 199 LAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQGVSISETAQECGFHDQSH 258
           LAQ  G+  F L R F+  FGL PHAY IQ RL  A+ LL +G + ++ A   GF DQSH
Sbjct: 194 LAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLAKARQLLARGETPAQVASVLGFADQSH 253

Query: 259 LHRHFKKALGITPKQYAR 276
           L R F++A  +TP  Y +
Sbjct: 254 LGRWFRRAYQLTPADYRK 271