Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  263 bits (673), Expect = 1e-74
 Identities = 188/584 (32%), Positives = 304/584 (52%), Gaps = 30/584 (5%)

Query: 37  KPLIVMAL-LSTAIAIIEVSLFGFMGQLVDWLST--SSPDTFLTENQSTLIGLGLLVLVG 93
           K  +V+AL    A  +  V +   + QLVD ++    S ++ L      L+  GLL L  
Sbjct: 44  KVRVVLALAFMVAAKMANVGVPLLLKQLVDAMTIRPGSVESMLVVPLGLLLAYGLLRL-S 102

Query: 94  MPLLIAFYSLLIHQSLLG-NYPMSIRWLAHRYLLKQSVSFYQDEFAGRISTKVMQTALAV 152
             +      L+  ++  G    +S++   H + L  S+ F+ +   G ++  + +    V
Sbjct: 103 TSVFTELRELVFAKATEGATRSISLQVFGHLHAL--SLRFHLERQTGGMTRDIERGTRGV 160

Query: 153 RETVMKSL-DVFVYVMVYFTAIVVILAQADWRLMIPMLIWLAIYVTVQMYYVPKLKKVAS 211
           +  +  SL  +F  ++     + ++  Q D   +   L+ L +YVT  +       +   
Sbjct: 161 QSLISYSLYSIFPTLIEVIMVLTLLGTQFDMGYVWITLVALVLYVTFTVLVTEWRTQFRR 220

Query: 212 EQADARSLMSGRIVDSYTNIMTVKLFSHSQRETQYAEEGMQDFLGTVHRQMRLVTGFNIW 271
           +  +  S    R +DS  N  TVK F++   E +  +E ++       R+ R+ +   + 
Sbjct: 221 KMNELESTSQSRAIDSLLNYETVKYFNNEGFEGRRYDEALEKL-----RRARIKSQTTLS 275

Query: 272 VEMANYLLVFTIAALSIYLW------ITSAISVGAIAVAVSLSLRINGMSKWIMWEVSAL 325
           +  A   LV  +A L + LW      ++  +++G + +  +  +++     ++      +
Sbjct: 276 MLNAGQQLVIAVA-LVLMLWRATQGVVSGQLTLGDLVMVNAFMIQLYIPLGFLGVLYREI 334

Query: 326 FENIGTVVDGMTMLGKPITVTDKPDAKPL-VVKHGGITFDDVSFHYGENKGVINHLNLNI 384
            +++  +     +L K   + D P A+PL +     + F++V F Y   + +++ ++ +I
Sbjct: 335 KQSLTDLEKMFALLEKEREIADVPGAQPLQLAGPPAVRFENVRFSYEPAREILHGISFDI 394

Query: 385 KPGEKVGLVGRSGAGKSTLVNLLLRFHDV----ESGRILIDGQPISEVTQESLRSKIGMV 440
            PG+ V +VG SG+GKSTL  LL RF+DV    E GRILIDGQ I  VTQ S+R  IG+V
Sbjct: 395 PPGKTVAVVGPSGSGKSTLARLLYRFYDVSNAAEGGRILIDGQDIKAVTQASVRQAIGIV 454

Query: 441 TQDTSLLHRSIRDNILYGNPNATEEQLLKATAQAHAHEFILGLTDPHGNSGYDAQVGERG 500
            QDT L + +I  NILYG P+A  E  ++A   AH H FI      H   GY   VGERG
Sbjct: 455 PQDTVLFNDTIEYNILYGRPDAGHEAAVRAAQAAHIHPFI-----QHLPLGYATMVGERG 509

Query: 501 VKLSGGQRQRIAISRVLLKDAPLLVLDEATSALDSEVEAAIQESLNELMQGKTVIAIAHR 560
           +KLSGG++QR+AI+R LLK+ P+++ DEATSALDS  E AIQ  L    + KT + IAHR
Sbjct: 510 LKLSGGEKQRVAIARTLLKNPPIVIFDEATSALDSANERAIQAELRSAARNKTTLVIAHR 569

Query: 561 LSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIYAHLWAHQTGG 604
           LST+     ++VL  G IVE+GTH EL+A+ G+YA +WA Q  G
Sbjct: 570 LSTVVDAHEILVLVNGDIVERGTHAELVARAGVYAGMWALQQSG 613