Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  269 bits (688), Expect = 3e-76
 Identities = 200/603 (33%), Positives = 304/603 (50%), Gaps = 40/603 (6%)

Query: 17  PQRPPNT-----LWAFCRHYT----RGFEKPLIVMALLSTAIAIIEVSL-FGFMGQ-LVD 65
           PQ PP+T     LW F R Y      GF     ++ L STA  ++   L    M + L+ 
Sbjct: 87  PQPPPSTWVLLRLWRFARPYRWTLLSGF-----LLTLASTAATLVPPYLTIPLMDRVLIP 141

Query: 66  WLSTSSPDTFLTENQSTLIGLGLLVLVGMPLLIAFYSLLIHQSLLGNYPMSIRWLAHRYL 125
           + +  + DT L      L+G GLL    +   + +    +   +       +R     +L
Sbjct: 142 FQNGQAIDTGLV---LALLG-GLLGSALLAWSLGWARTWLLALVSERISSDLRTTTFDHL 197

Query: 126 LKQSVSFYQDEFAGRISTKVMQTALAVRETV-MKSLDVFVYVMVYFTAIVVILAQADWRL 184
           L+ S+ ++  +  G +  ++      +   + + +LD    V++     V++ +   W  
Sbjct: 198 LELSLDYFSSKRTGDLMARIGSETDRISVFLSLHALDFLTDVLMIGMTAVILFSINPWLA 257

Query: 185 M-----IPMLIWLAIYVTVQMYY-VPKLKKVASEQADARSLMSGRIVDSYTNIMTVKLFS 238
           +     +P + W+   V  ++     K+ +V  E  +        + D+   I  VK F+
Sbjct: 258 LATLVPLPFIGWMIHLVRDRLRTGFEKIDRVWGEVTNV-------LADTIPGIRVVKAFA 310

Query: 239 HSQRETQYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWITSAISV 298
              RE +      +  L    R  +  + F   V +   + +  + A  I+L   S I+V
Sbjct: 311 QEAREARRFRRANEHNLAVNDRINKTWSLFTPTVTLLTEIGLLVVWAFGIWLVSQSEITV 370

Query: 299 GAIAVAVSLSLRINGMSKWIMWEVSALFENIGTVVDGMTMLGKPITVTDKPDAKPLVVKH 358
           G +   ++   R  G    +   VS   +          +L     V +     PL    
Sbjct: 371 GVLTAFIAYIGRFYGRLDSMSRIVSVTQKAASGAKRIFDILDHVSNVPEPTQPVPLTRVQ 430

Query: 359 GGITFDDVSFHYGENKGVINHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVESGRI 418
           GG+  ++VSF YG ++ VI +L+L+I+PGE +GLVG SG+GKSTLVNLL RF+DV  G I
Sbjct: 431 GGLQMENVSFRYG-SRTVIRNLSLDIRPGEMIGLVGHSGSGKSTLVNLLCRFYDVSEGGI 489

Query: 419 LIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPNATEEQLLKATAQAHAHE 478
            IDG  I  V     R  IG+V Q+  L   +I +NI YG P AT  +++ A   AHAHE
Sbjct: 490 RIDGTDIRRVGVADFRRHIGLVLQEPFLFFGTIAENIAYGRPGATRTEIVAAARAAHAHE 549

Query: 479 FILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDEATSALDSEVE 538
           FIL L       GYD+ VGERG  LSGG+RQRI+I+R LL D  +L+LDEATS++D+E E
Sbjct: 550 FILRLPQ-----GYDSLVGERGQGLSGGERQRISIARALLIDPRILILDEATSSVDTETE 604

Query: 539 AAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIYAHLW 598
             IQ++L+ L+QG+T IAIAHRLST+   DRL+V+D+GQ+VE G H EL+AQ G Y  L+
Sbjct: 605 KEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVMDRGQVVEIGPHDELMAQRGAYWRLY 664

Query: 599 AHQ 601
             Q
Sbjct: 665 EAQ 667