Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., lipid A export permease/ATP-binding protein MsbA from Magnetospirillum magneticum AMB-1

 Score =  262 bits (670), Expect = 3e-74
 Identities = 164/487 (33%), Positives = 261/487 (53%), Gaps = 7/487 (1%)

Query: 115 MSIRWLAHRYLLKQSVSFYQDEFAGRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIV 174
           M  R  AH  L++  V+F+     GRI +++      +R  V  +L            ++
Sbjct: 104 MQSRLFAH--LMRLDVAFFHANSTGRILSRLTNDISQMRFAVSDALTGAGKDASSVIFLI 161

Query: 175 VILAQADWRLMIPMLIWLAIYVTVQMYYVPKLKKVASEQADARSLMSGRIVDSYTNIMTV 234
             +   DWRL         I +        +++KV +   +    ++  +  +   I  V
Sbjct: 162 GAMFYQDWRLSAWTFFIFPIAILPIRKLGRRMRKVTANTQEHMGQLTTYLEQAVQGIRVV 221

Query: 235 KLFSHSQRETQYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWITS 294
           K +   + E +     ++     +++  R+ +  +  +E+   + +  +        +  
Sbjct: 222 KAYGMEEYEKRKVGALVEMLQDLIYKAARVRSASSPIMELLGGIAITVVILYGGTRVVNG 281

Query: 295 AISVGAIAVAVSLSLRINGMSKWIMWEVSALFENIGTVVDGMTMLGKPITVTDKPDAKPL 354
             + GA    ++  +      K +    + L E +       ++L    T+ +K  A  L
Sbjct: 282 ETTPGAFFSFITALMLAYRPIKSLAAMNTNLQEGLAAASRTFSVLDTQPTIFEKDGAADL 341

Query: 355 VVKHGGITFDDVSFHYGENKGVINHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVE 414
           VV  G ++F+ V F Y  +K V++ ++L +  G+ V LVG SGAGKST++NLL RF+DV 
Sbjct: 342 VVLEGNVSFEGVFFTYDGSKAVLDGIDLAVPGGKTVALVGPSGAGKSTVLNLLPRFYDVT 401

Query: 415 SGRILIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPNATEEQLLKATAQA 474
            G +L+DGQ +  V+  SLRSKI +V+Q+ +L   SIR NI YG   AT+E++  A   A
Sbjct: 402 DGHVLVDGQDVRNVSLSSLRSKIALVSQEITLFDDSIRANIAYGRFGATDEEIEAAARSA 461

Query: 475 HAHEFILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDEATSALD 534
            AH+FI+ L +     GYD  VGERG+ LSGGQRQR+AI+R +LK+AP+L+LDEATSALD
Sbjct: 462 AAHDFIVSLPE-----GYDTVVGERGLNLSGGQRQRLAIARAMLKNAPILLLDEATSALD 516

Query: 535 SEVEAAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIY 594
           +E E  +Q +L  LM+G+T I IAHRLST+   D + VLDKG+++E G H  L+A+NG Y
Sbjct: 517 TESERQVQTALELLMRGRTTIVIAHRLSTVVNADLIHVLDKGRVIESGDHNALMAKNGTY 576

Query: 595 AHLWAHQ 601
           A L+A Q
Sbjct: 577 ARLYAMQ 583