Pairwise Alignments

Query, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Dickeya dianthicola ME23

 Score =  241 bits (614), Expect = 8e-68
 Identities = 188/599 (31%), Positives = 301/599 (50%), Gaps = 52/599 (8%)

Query: 24  LWAFCRHYTRGFEKPLIVMALLSTAIAIIEVSLFGFMGQLVDWLSTSSPDTFLTENQSTL 83
           LW     Y  G    L V A+     A  +  +   +  L+D       D F   ++S L
Sbjct: 16  LWPMISPYKAG----LTVAAVALVVNAAGDTLMLSLLKPLLD-------DGFGKADRSVL 64

Query: 84  IGL-----GLLVLVGMPLLIAFYSLLIHQSLLGNYPMSIRWLAHRYLLKQSVSFYQDEFA 138
           + +     GL+++ G+   I+ Y +     + G   M++R     +++   VSF+  +  
Sbjct: 65  VWMPLAIIGLMIMRGISSYISSYCVAW---VSGKVVMNMRRRLFSHIMGMPVSFFDQQST 121

Query: 139 GRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIVVILAQADWRLMIPMLIWLAIYVTV 198
           G + +++   +  V  +   +L   V        + V++    W+L + +L+ +A  V+ 
Sbjct: 122 GTLLSRITYDSEQVAASSSNALVTVVREGASIIGLFVLMFWYSWQLSL-ILVLIAPIVSY 180

Query: 199 QMYYVPK-LKKVASEQADARSLMSGRIVDSYTNIMTVKLFSHSQRETQYAEEGMQDFLGT 257
            M  V K  + ++    +    ++            V +F       Q  E    D +  
Sbjct: 181 SMRVVSKRFRSISKSMQNTMGQVTTSAEQMLKGHKEVLIFGG-----QTVEVERFDAVSN 235

Query: 258 VHRQ--MRLVTGFNIWVEM----ANYLLVFTIAALSIYLWITSAISVGAIAVAVSLSLRI 311
             RQ  M++V+  +I   +    A+  L F + A S +  +   ++ G I V  S    +
Sbjct: 236 RMRQQGMKMVSASSISDPVVQLIASLALAFVLYAAS-FPSVMETLTAGTITVVFSSMFTL 294

Query: 312 NGMSKWIMWEVSALFENIGTVVDGMTMLGKPITVTD---KPDAKPLVVKH--GGITFDDV 366
               K +   V+A F+       GM       T+ D   + D    V+ H  G I F  V
Sbjct: 295 MRPLKSLT-NVNAQFQR------GMAACQTLFTILDMEQEKDTGTRVLAHAKGNIEFRQV 347

Query: 367 SFHY-GENKGVINHLNLNIKPGEKVGLVGRSGAGKSTLVNLLLRFHDVESGRILIDGQPI 425
           +F Y G+    + +++L+I PG+ V LVGRSG+GKST+ NL+ RF+D+++G IL+DG  +
Sbjct: 348 NFTYPGKETLALKNISLHIPPGKTVALVGRSGSGKSTIANLITRFYDIQAGEILLDGHDL 407

Query: 426 SEVTQESLRSKIGMVTQDTSLLHRSIRDNILYG-NPNATEEQLLKATAQAHAHEFILGLT 484
            + T  SLRS++ +V+Q+  L + +I +NI Y      + E + +A   AHA +FI  L 
Sbjct: 408 RDYTLSSLRSQVALVSQNVHLFNDTIANNIAYACGDRYSREDIERAAKMAHAMDFIGRL- 466

Query: 485 DPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVLDEATSALDSEVEAAIQES 544
                 G D  +GE GV LSGGQRQRIAI+R LL+D P+LVLDEATSALD+E E AIQ +
Sbjct: 467 ----EQGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILVLDEATSALDTESERAIQAA 522

Query: 545 LNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQELIAQNGIYAHLWAHQTG 603
           L+EL + +T + IAHRLSTI   D ++V++ GQI+E+G H EL+A+NG YA L   Q G
Sbjct: 523 LDELQKNRTALVIAHRLSTIEKADEILVVEDGQIIERGQHSELLARNGAYAQLHKLQFG 581